View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_16 (Length: 702)
Name: NF1343_low_16
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 5e-95; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 462 - 662
Target Start/End: Original strand, 33557531 - 33557731
Alignment:
| Q |
462 |
aattttagttgcatatcatgatttttctcataattatggtgcaggctgttcctctatatctttcagaaatggcaccagcaaaaattagaggagcagtgaa |
561 |
Q |
| |
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||||||| ||||||| |||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33557531 |
aattttacttgcatagcatgatttttctaattattacggtgcaggctgttcctctatatctttcagaaatggcaccagcaaaaattagaggagcagtgaa |
33557630 |
T |
|
| Q |
562 |
ccaactcttccaattaacaacatgtttaggaattttgattgctaaccttgtgaattatggtactgagaaaattcacccatggggatggagattatcccta |
661 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33557631 |
ccaactcttccaattaacaacatgtttaggaattttgattgctaaccttgtgaattatggtactgagaaaattcacccttggggatggagattatcccta |
33557730 |
T |
|
| Q |
662 |
g |
662 |
Q |
| |
|
| |
|
|
| T |
33557731 |
g |
33557731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 462 - 662
Target Start/End: Original strand, 33564748 - 33564948
Alignment:
| Q |
462 |
aattttagttgcatatcatgatttttctcataattatggtgcaggctgttcctctatatctttcagaaatggcaccagcaaaaattagaggagcagtgaa |
561 |
Q |
| |
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||||||| ||||||| |||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33564748 |
aattttacttgcatagcatgatttttctaattattacggtgcaggctgttcctctatatctttcagaaatggcaccagcaaaaattagaggagcagtgaa |
33564847 |
T |
|
| Q |
562 |
ccaactcttccaattaacaacatgtttaggaattttgattgctaaccttgtgaattatggtactgagaaaattcacccatggggatggagattatcccta |
661 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33564848 |
ccaactcttccagttaacaacatgtttaggaattttgattgctaaccttgtgaattatggtactgagaaaattcacccttggggatggagattatcccta |
33564947 |
T |
|
| Q |
662 |
g |
662 |
Q |
| |
|
| |
|
|
| T |
33564948 |
g |
33564948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 33557410 - 33557513
Alignment:
| Q |
10 |
aagaatatagcaatgttgatcattggacgtattcttcttggaattggtattggatttggaaaccaagtaagtttaattttagagtttaataactacagac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33557410 |
aagaatatagcaatgttgatcattggacgtattcttcttggaattggtattggatttggaaaccaagtaagtttaattttagagtttaataactacagac |
33557509 |
T |
|
| Q |
110 |
tact |
113 |
Q |
| |
|
|||| |
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|
| T |
33557510 |
tact |
33557513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 33564627 - 33564730
Alignment:
| Q |
10 |
aagaatatagcaatgttgatcattggacgtattcttcttggaattggtattggatttggaaaccaagtaagtttaattttagagtttaataactacagac |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33564627 |
aagaatatagcaatgttgatcattggacgtattcttcttggaattggtattggatttggaaaccaagtaagttcaattttagagtttaataactacagac |
33564726 |
T |
|
| Q |
110 |
tact |
113 |
Q |
| |
|
|||| |
|
|
| T |
33564727 |
tact |
33564730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 504 - 657
Target Start/End: Original strand, 43379939 - 43380092
Alignment:
| Q |
504 |
aggctgttcctctatatctttcagaaatggcaccagcaaaaattagaggagcagtgaaccaactcttccaattaacaacatgtttaggaattttgattgc |
603 |
Q |
| |
|
|||||||||| ||||||| ||||||||| | || |||||| | ||||||||||||||||||||||| ||||||||||| ||||| ||||||||| | || |
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| T |
43379939 |
aggctgttcccttatatctgtcagaaatgtctcctgcaaaagtgagaggagcagtgaaccaactctttcaattaacaacttgtttgggaattttggtagc |
43380038 |
T |
|
| Q |
604 |
taaccttgtgaattatggtactgagaaaattcacccatggggatggagattatc |
657 |
Q |
| |
|
|||| | || ||||||| || |||| |||||| |||||||||||||||||||| |
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|
| T |
43380039 |
taacttggtaaattatgcaaccgagagaattcatccatggggatggagattatc |
43380092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 697
Target Start/End: Complemental strand, 26631505 - 26631471
Alignment:
| Q |
663 |
ctgttgcgaaattcctcgcaagttcagcttctctt |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
26631505 |
ctgttgcgaaattcctcgcaagttcagcttctctt |
26631471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 25712122 - 25712065
Alignment:
| Q |
22 |
atgttgatcattggacgtattcttcttggaattggtattggatttggaaaccaagtaa |
79 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||| ||||||||||| ||||| |||| |
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|
| T |
25712122 |
atgttgatcattggtcgtatccttcttggcgttggcattggatttggtaaccaggtaa |
25712065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 11395006 - 11395109
Alignment:
| Q |
277 |
aagtctcacattgaatataagagataaggtttgaactgagtttataaagaatgtcattcctcaccttacaaaatggtttgataaggttgagatagactca |
376 |
Q |
| |
|
||||||||||||||||| | |||||||| |||| ||||||||||||| || ||||||||| ||||||| ||||| |||| |||| |||||||| |
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| T |
11395006 |
aagtctcacattgaata---gtgataaggtctgaaacgagtttataaagagtgacattcctcaacttacaagtcggtttttgaaggatgagttagactca |
11395102 |
T |
|
| Q |
377 |
atataaa |
383 |
Q |
| |
|
||||||| |
|
|
| T |
11395103 |
atataaa |
11395109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 11404733 - 11404836
Alignment:
| Q |
277 |
aagtctcacattgaatataagagataaggtttgaactgagtttataaagaatgtcattcctcaccttacaaaatggtttgataaggttgagatagactca |
376 |
Q |
| |
|
||||||||||||||||| | |||||||| |||| ||||||||||||| || ||||||||| ||||||| ||||| |||| |||| |||||||| |
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|
| T |
11404733 |
aagtctcacattgaata---gtgataaggtctgaaacgagtttataaagagtgacattcctcaacttacaagtcggtttttgaaggatgagttagactca |
11404829 |
T |
|
| Q |
377 |
atataaa |
383 |
Q |
| |
|
||||||| |
|
|
| T |
11404830 |
atataaa |
11404836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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