View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_161 (Length: 260)
Name: NF1343_low_161
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_161 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 11884979 - 11884725
Alignment:
| Q |
1 |
agttttactttaatcaagagttttgcatgatctgtttggaaataggaagcattatgctcaatattttaaaactcgatcttgtgtatccaaaaactcatca |
100 |
Q |
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| T |
11884979 |
agttttactttaatcaagagttttgcatgatctgtttggaaataggaagcattatgctcaatattttaaaactcgatcttgtgtatccaaaaactcatca |
11884880 |
T |
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| Q |
101 |
aactacactcttttgcgatacttttcttctcaagaccaactttacaaaagtaaataaataatgaatgagattggaataaaaatcatcaaacaagataaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11884879 |
aactacactcttttgcgatacttttcttctcaagaccaactttacaaaagtaaataaataatgaatgagattggaataaaaatcatcaaacaagataaat |
11884780 |
T |
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| Q |
201 |
actcgaattttgcattcaagtgttttctttctgtctgcatccaagaataatctac |
255 |
Q |
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| T |
11884779 |
actcgaattttgcattcaagtgttttctttctgtctgcatccaagactaatctac |
11884725 |
T |
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