View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_163 (Length: 254)
Name: NF1343_low_163
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_163 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 1717329 - 1717121
Alignment:
| Q |
16 |
atattgactacataagaaatgatagagcatgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaaaaccaaatccttgccaataa |
115 |
Q |
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| T |
1717329 |
atattgactacataagaaatgatagagcctgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaataccaaatccttgccaataa |
1717230 |
T |
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| Q |
116 |
tagttaactttattgataattttattagagatcatgttatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaa |
215 |
Q |
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| T |
1717229 |
tagttaactttattgataattttattagagatcatattatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaa |
1717130 |
T |
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| Q |
216 |
tggagtata |
224 |
Q |
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||||||||| |
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| T |
1717129 |
tggagtata |
1717121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 1738826 - 1738727
Alignment:
| Q |
16 |
atattgactacataagaaatgatagagcatgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaa--aaccaaatccttgccaat |
113 |
Q |
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| T |
1738826 |
atattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttgccaat |
1738727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 1738598 - 1738531
Alignment:
| Q |
153 |
tatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaatggag |
220 |
Q |
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| T |
1738598 |
tatatattgaggatatctaaatgattttacttttctattttggtaggggaatggacggctgaatggag |
1738531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 1748681 - 1748591
Alignment:
| Q |
16 |
atattgactacataagaaatgatagagcatgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaaaaccaaatcct |
106 |
Q |
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| T |
1748681 |
atatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctcttacttttataggtaaaaaccaaatcct |
1748591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 1753997 - 1753919
Alignment:
| Q |
16 |
atattgactacataagaaatgatagagcatgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaa |
94 |
Q |
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| T |
1753997 |
atattgactacataaacaacgaaagagcctcagatcttagcggcgtctcttcaacaaacgctcttagttttgtaggtaa |
1753919 |
T |
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