View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_166 (Length: 252)
Name: NF1343_low_166
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_166 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 32686515 - 32686296
Alignment:
| Q |
5 |
tgagaatataattaaacgagctttgatggcatttgttttggactttaatgccatagttttggactttgttaaaccagctataatttgcttctgcaatttt |
104 |
Q |
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| T |
32686515 |
tgagaatataattaaacgagctttgatggcatttgttttggactttaatgccatagttttggactttgttaaaccagctataatttgcttctgcaatttt |
32686416 |
T |
|
| Q |
105 |
gctgttttgttcatcatgttgctcattgtagtaataattgatgactttgcaaaatagcttatgaaagtaaaatagttgaatgaactaaatcaaatttgga |
204 |
Q |
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| T |
32686415 |
gctgttttgttcatcatgttgctcattgtagtaataattgatgactttgcaaaatagcttatgaaagtaaaatagttgaatgaactaaatcaaatttgga |
32686316 |
T |
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| Q |
205 |
taacaattttgggaatgttt |
224 |
Q |
| |
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|||||||||||||||||||| |
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| T |
32686315 |
taacaattttgggaatgttt |
32686296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 32695537 - 32695325
Alignment:
| Q |
5 |
tgagaatataattaaacgagctttgatggcatttgttttggactttaatgccatagttttggacttt---------gttaaaccagctataatttgcttc |
95 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||| |||||||| || || ||||||||| |
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| T |
32695537 |
tgagaatataatcaaacgagctttgacggcatttgttttggactttatagccatagtttttgactttgtcattgcggttaaaccggcaatgatttgcttc |
32695438 |
T |
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| Q |
96 |
tgcaattttgctgttttgttcatcatgttgctcattgtagtaataattgat---------gactttgcaaaatagcttatgaaagtaaaatagttgaatg |
186 |
Q |
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| T |
32695437 |
aacaattttgctgttttgctcttcatgtttgtcattgtagtaataattgatgactctagagacttagcaaaataggtagtgaaagtaaaaaagtttaatg |
32695338 |
T |
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| Q |
187 |
aactaaatcaaat |
199 |
Q |
| |
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| T |
32695337 |
aactaaatcaaat |
32695325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 32679474 - 32679262
Alignment:
| Q |
5 |
tgagaatataattaaacgagctttgatggcatttgttttggactttaatgccatagttttggacttt---------gttaaaccagctataatttgcttc |
95 |
Q |
| |
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||||| ||||||| ||||||||||||||| |||||||||||||||||| | ||||||||| |||||| |||||| | || || |||||||| |
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| T |
32679474 |
tgagagtataattgaacgagctttgatggtatttgttttggactttaaagacatagtttttgactttgtcattgaggttaaatcggcaatgatttgcttt |
32679375 |
T |
|
| Q |
96 |
tgcaattttgctgttttgttcatcatgttgctcattgtagtaataattgat---------gactttgcaaaatagcttatgaaagtaaaatagttgaatg |
186 |
Q |
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||| ||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| ||| | || |
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| T |
32679374 |
aacaaatttgctgttttgttcttcatgttgctcattgtagtaactattgatgactctagagactttgcaaaatagcttgtgaaagtaaaaaagtctagtg |
32679275 |
T |
|
| Q |
187 |
aactaaatcaaat |
199 |
Q |
| |
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||||||||||||| |
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| T |
32679274 |
aactaaatcaaat |
32679262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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