View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_low_169 (Length: 251)

Name: NF1343_low_169
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_low_169
NF1343_low_169
[»] scaffold0002 (2 HSPs)
scaffold0002 (17-180)||(422733-422896)
scaffold0002 (17-90)||(411216-411289)
[»] chr2 (1 HSPs)
chr2 (183-243)||(32898587-32898647)
[»] chr1 (2 HSPs)
chr1 (89-167)||(30208922-30209000)
chr1 (183-243)||(46312452-46312512)
[»] chr6 (3 HSPs)
chr6 (186-243)||(20409829-20409886)
chr6 (17-87)||(17529844-17529914)
chr6 (24-90)||(17530659-17530725)
[»] chr5 (1 HSPs)
chr5 (186-243)||(17414931-17414988)
[»] chr4 (1 HSPs)
chr4 (186-243)||(40169027-40169084)


Alignment Details
Target: scaffold0002 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 422896 - 422733
Alignment:
Q  17 acctccatcaacaaaactatttctttatcgccaaatcaaatcgacgaaataccaaattagtatattatgttggacaagaacaacaacacagtcgcagtca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  422896 acctccatcaacaaaactatttctttatcgccaaatcaaatcgacgaaataccaaattagtatattatgttggacaagaacaacaacacagtcgcagtca 422797  T
Q  117 caggggaggaatccattcatgatgatcaagaaaccatagctactcctgatggtgcaacagctag 180  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| || |||| ||||    
T  422796 caggggaggaatccattcataatgatcaagaaaccatagctactcctgatgatgaaacacctag 422733  T

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Target: scaffold0002; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 411289 - 411216
Alignment:
Q  17 acctccatcaacaaaactatttctttatcgccaaatcaaatcgacgaaataccaaattagtatattatgttgga 90  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  411289 acctacatcaacaaaactatttccttatcgccaaatcaaatcgacgaaataccaagttagtaaattatgttgga 411216  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 32898587 - 32898647
Alignment:
Q  183 ctttgtcctgaaccaagttcaccttcttcagtttaccttccacctcttcttgattcatctc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32898587 ctttgtcctgaaccaagttcaccttcttcagtttaccttccacctcttcttgattcatctc 32898647  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 30209000 - 30208922
Alignment:
Q  89 gacaagaacaacaacacagtcgcagtcacaggggaggaatccattcatgatgatcaagaaaccatagctactcctgatg 167  Q
    ||||| |||||||||||||| ||  ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||    
T  30209000 gacaacaacaacaacacagttgctttcacaggggaggaatccattcctgataatcaagaaaccatagctgctcctgatg 30208922  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 46312452 - 46312512
Alignment:
Q  183 ctttgtcctgaaccaagttcaccttcttcagtttaccttccacctcttcttgattcatctc 243  Q
    |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  46312452 ctttgtccagaaccaagttcaccttcttccgtttatcttccacctcttcttgattcatctc 46312512  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 20409886 - 20409829
Alignment:
Q  186 tgtcctgaaccaagttcaccttcttcagtttaccttccacctcttcttgattcatctc 243  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  20409886 tgtccagaaccaagttcaccttcttccgtttatcttccacctcttcttgattcatctc 20409829  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 17529914 - 17529844
Alignment:
Q  17 acctccatcaacaaaactatttctttatcgccaaatcaaatcgacgaaataccaaattagtatattatgtt 87  Q
    |||||||||| ||||| |||||||||||| ||||||| ||| || |||||||||| ||||||||| |||||    
T  17529914 acctccatcatcaaaaatatttctttatcaccaaatccaattgatgaaataccaagttagtatatcatgtt 17529844  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 17530659 - 17530725
Alignment:
Q  24 tcaacaaaactatttctttatcgccaaatcaaatcgacgaaataccaaattagtatattatgttgga 90  Q
    ||||||||| |||||||||||| | |||||| ||||| ||||| |||| ||||||||||||||||||    
T  17530659 tcaacaaaagtatttctttatcacaaaatcatatcgatgaaatgccaagttagtatattatgttgga 17530725  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 17414931 - 17414988
Alignment:
Q  186 tgtcctgaaccaagttcaccttcttcagtttaccttccacctcttcttgattcatctc 243  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  17414931 tgtccagaaccaagttcaccttcttccgtttatcttccacctcttcttgattcatctc 17414988  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 40169027 - 40169084
Alignment:
Q  186 tgtcctgaaccaagttcaccttcttcagtttaccttccacctcttcttgattcatctc 243  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  40169027 tgtccagaaccaagttcaccttcttccgtttatcttccacctcttcttgattcatctc 40169084  T

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