View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_172 (Length: 251)
Name: NF1343_low_172
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_172 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 61 - 251
Target Start/End: Original strand, 3083984 - 3084180
Alignment:
| Q |
61 |
aataccatttagaattacc----gtggtgaaaagagtggcaaaagtattatagtttctagaaggaagaaattgttcaaggagagactcaagatcaatgat |
156 |
Q |
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| T |
3083984 |
aataccatttagaattacctaatgtggtgaaaagagtggcaaaagtattatagtttctagaaggaagaagttgttcaaggagagactcaagatcaatgat |
3084083 |
T |
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| Q |
157 |
agcaaatacaggctttgaagagctgggacac--agattgcggaggacgagtaggacaattctgaattaagtgttcgggtgacttgcagcatcaacaa |
251 |
Q |
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| T |
3084084 |
agcaaatacaggctttgaagagctgggacacagagattgcggaggacgagtaggacaattctgaattaagtgtttgggtgacttgcagcatcaacaa |
3084180 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 17450254 - 17450199
Alignment:
| Q |
24 |
gatgcagatgtcatgtgattacaacaggatgaatctaaataccatttagaattacc |
79 |
Q |
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| T |
17450254 |
gatgaagatgtcatgtggttacaacaggcagaatctaaataccatttagaattacc |
17450199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 14824764 - 14824714
Alignment:
| Q |
191 |
ttgcggaggacgagtaggacaattctgaattaagtgttcgggtgacttgca |
241 |
Q |
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| T |
14824764 |
ttgcggaggacgagtaggacaattctgaattaagtgtccaggtgtcttgca |
14824714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 14824999 - 14824938
Alignment:
| Q |
9 |
gaagaatataagtgtgatgcagatgtcatgtgattacaacaggatgaatctaaataccattt |
70 |
Q |
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| T |
14824999 |
gaagaaaacaagtgagatgcatatgttatgtgattacaacaggcagaatctaaataccattt |
14824938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 14824917 - 14824859
Alignment:
| Q |
100 |
agtattatagtttctagaaggaagaaattgttcaaggagagactcaagatcaatgatag |
158 |
Q |
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| T |
14824917 |
agtattaccgttactagaaggaagaagttgtctaaggagagactcaagatcagtgatag |
14824859 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 24431205 - 24431150
Alignment:
| Q |
24 |
gatgcagatgtcatgtgattacaacaggatgaatctaaataccatttagaattacc |
79 |
Q |
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| T |
24431205 |
gatgaagatgtcatgtggttacaacaggcagaatctaaataccatttagaattacc |
24431150 |
T |
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