View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_173 (Length: 251)
Name: NF1343_low_173
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_173 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 3536385 - 3536148
Alignment:
| Q |
14 |
aggtttgcttttatgcagtggtgactcttcatgagtgaattggatcactagacagatgtttctactgggggatgttggaagattgccaaaaaaggagtga |
113 |
Q |
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| T |
3536385 |
aggtttgcttttatgcagtggtgactcttcatgagtgaattggatcactagacagatgtttctactgggggttgttggaagattgccaaaaaaggagtga |
3536286 |
T |
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| Q |
114 |
acaattgagtaggtcttgggtggtaaggcgggaaccaaggttatcaaatcgagatttaaattgtgaatatgaaaacttattttccaaattaattgaatct |
213 |
Q |
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| T |
3536285 |
acaattgagtaggtcttgggtggtaaggcgggaaccaaggttatcaaatcgagatttaaattgtgaatatgaaaacttattttccaaattaattgaatct |
3536186 |
T |
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| Q |
214 |
tattatgaatcataagatacattatcatgaaaaatcac |
251 |
Q |
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| T |
3536185 |
tattatgaatcataagatacattatcatgaaaaatcac |
3536148 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 6430784 - 6430696
Alignment:
| Q |
152 |
ggttatcaaatcgagatttaaattgtgaatatgaaaacttattttccaaatta---attgaatcttattatgaatcataagatacatta |
237 |
Q |
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| T |
6430784 |
ggttatcaaatcgagattcaaattgtgaatcaaaagacctattttccaaatgatgaatcaaatcttattatgaatcataagatacatta |
6430696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 4377063 - 4377027
Alignment:
| Q |
204 |
aattgaatcttattatgaatcataagatacattatca |
240 |
Q |
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| T |
4377063 |
aattgaatcttgttatgaatcctaagatacattatca |
4377027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 27935471 - 27935504
Alignment:
| Q |
204 |
aattgaatcttattatgaatcataagatacatta |
237 |
Q |
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| T |
27935471 |
aattgaatcttattatgaatcatatgatacatta |
27935504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 31703272 - 31703201
Alignment:
| Q |
152 |
ggttatcaaatcgagatttaaattgtgaatatg-aaaacttattttccaaatt---aattgaatcttattat |
219 |
Q |
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| T |
31703272 |
ggttatcaaatcgagattcatattgtgaatctgaaaaacttattttctaaattgcaaactgaatcttattat |
31703201 |
T |
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