View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1343_low_175 (Length: 251)
Name: NF1343_low_175
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_175 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 11983100 - 11982861
Alignment:
| Q |
1 |
ttgtcaccagaaattgcacgatgaggcatctttacatctatcattcgataatgtccagattgcttcattcaataaggagtcaaatgtcctcgacgttgcc |
100 |
Q |
| |
|
||||||| | ||||||||| ||||| | || ||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
11983100 |
ttgtcactataaattgcactatgagacgtcgttatatctatcattcgataatgtccagattgcttcattcaatgaggtgtcaaatgtcgtcgacgttgcc |
11983001 |
T |
|
| Q |
101 |
aatttttgcgatgactgtgatgagttttctagggccaaaaaattccttctatacaactcttctgcactaaagaagaggaaaagggtggcaatgatcttat |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11983000 |
aatttttgcgatgaccgtgatgagttttctagggccaaaaaattccttctatacaactcttctgcactaaagaagaggaaaagggtggcaatgatcttat |
11982901 |
T |
|
| Q |
201 |
cttcactaagtctgatcttattaattccaaacaatttcat |
240 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11982900 |
cttcactaagtctgatcttataaattccaaacaatttcat |
11982861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University