View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_18 (Length: 683)
Name: NF1343_low_18
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 3e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 20363824 - 20363639
Alignment:
| Q |
16 |
atgtcttctttttccataacaaatcagaaacacagtgtctcccctcattggtatcacacgaacatgttgaaatctagcatcaatgatcttttgccgaaca |
115 |
Q |
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| T |
20363824 |
atgtcttctttttccataacaaatcagaaacacagtgtctcccctcattggtatcacacgaacatgttgaaatctagcatcaatgatcttttgccgaaca |
20363725 |
T |
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| Q |
116 |
attgaaaaaatttctccaataagaacctttctaagacacccaaactcgcccgaaaaatatcctccttttcggtgtaatatttccta |
201 |
Q |
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| T |
20363724 |
attgaaaaaatttctccaataagaacctttctaagacacccatactcgcccaaaaaatatcctccttttcggagtaatatttccta |
20363639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 202 - 340
Target Start/End: Complemental strand, 20363557 - 20363419
Alignment:
| Q |
202 |
ctgtttggtttttaaaacattgatttaaagtatcaaattcacatgtttgttgtttcttttgaaaaggaaaaatttaataatcactgctagaaagtataag |
301 |
Q |
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| T |
20363557 |
ctgtttggtttttaaaacattgatttaaagtatcaaattcacatgtttgttgtttcttttgaaaaggcaaaatttaataatcactgctagaaaggataag |
20363458 |
T |
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| Q |
302 |
atattctctccaagtagacaaaaacaaagttacacgttt |
340 |
Q |
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| T |
20363457 |
atattctctccaagtagacaaaaacaaagttacacgttt |
20363419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 20371565 - 20371385
Alignment:
| Q |
19 |
tcttctttttccataacaaatcagaaacacagtgtctcccctcattggtatcacacgaacatgttgaaatctagcatcaatgatcttttgccgaacaatt |
118 |
Q |
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| T |
20371565 |
tcttgtttttccataacaaatcagaaacacaatgtctcccct--ttggtatcatgcaaacatgttgaaatctgacatcaatgatcttttgctgaacagct |
20371468 |
T |
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| Q |
119 |
gaaaaaatttctccaataagaacctttctaagacacccaaactcgcccgaaaaatatcctccttttcggtgtaatatttccta |
201 |
Q |
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| T |
20371467 |
taaaaactttctcctttaaaaaccttgcaacaacacccttactctcccaagcaatatcatccttttcggagtaatatttccta |
20371385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 20363396 - 20363350
Alignment:
| Q |
338 |
ttttggtgaattaactaacattaatgtactatttatgttatatatgt |
384 |
Q |
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| T |
20363396 |
ttttggtgaattaactaacattaatgtactatttatgttatatatgt |
20363350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 589 - 656
Target Start/End: Original strand, 38816865 - 38816932
Alignment:
| Q |
589 |
aatataccatatcacattaattgaattgtaaaacccaactatttttaacctgcatcgactctctgttg |
656 |
Q |
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| T |
38816865 |
aatataccatattacattaattgaattgtaaaacccaactatttttaacctgcagcgactctctgttg |
38816932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 473 - 540
Target Start/End: Complemental strand, 44316563 - 44316497
Alignment:
| Q |
473 |
tcaaatgatttttgcaggaggtttcaagtgacaccctttgtgggatagttcagtacacaaatctttac |
540 |
Q |
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| T |
44316563 |
tcaaatgatttttgcaggaggtttcaa-tgacaccctttgtgggatagttcagtacacaaatctttac |
44316497 |
T |
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