View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_2 (Length: 1020)
Name: NF1343_low_2
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 595; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 7 - 744
Target Start/End: Original strand, 22552934 - 22553674
Alignment:
| Q |
7 |
agcataggccatgtaaaatcaggatagattcttggtgtcaaatcactcaccaattcacttggtggacaaaccaccttatcaccttttggacacaaaaaga |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22552934 |
agcataggccatgtaaaatcaggatagattcttggtgtcaaatcactcaccaattcacttggtggacaaaccaccttatcaccttttggacacaaaaaga |
22553033 |
T |
|
| Q |
107 |
aagctagagattttcttgttgtcttgttgttcaccactgccctatgtaaacaactcttgtatctcccatttgaaagagcctaaacaaaaagagagtgnnn |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22553034 |
aagctagagattttcttgttgtcttgttgttcaccactgccctatgtaaacaactcttgtatctcccatttgaaagagcctaaacaaaaagagagtgaaa |
22553133 |
T |
|
| Q |
207 |
nnnngttcaataacaccatcatacataaaatatgtggccaaaattcatgacccttttgctaaatatttatttnnnnnnnnngttagttacaaaaataatt |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| | |||||||||||||||| |
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| T |
22553134 |
aaaagttcaataacaccatcatacataaaatatgtggccaaaattcatgacccttttgttaagtatttctttaaaaaaaaattgagttacaaaaataatt |
22553233 |
T |
|
| Q |
307 |
ttttaaaaatagtttacttctagatannnnnnnnn---gtttaagaatctaaaacaaaacaatgaaaactttcaaaagtgttgaaaagaaagagaacata |
403 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22553234 |
ttttaaaaatagtttacttctagattttttttttgtttgtttaagaatctaaaacaaaacaatgaaaactttcaaaagtgttgaaaagaaagagaacata |
22553333 |
T |
|
| Q |
404 |
acataccatgaaagtgtcaccaatattgacaacaaaagcattgaaatttggcctaatggaatgccattcattgtcaacaaaaacttgcaagccaccaact |
503 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22553334 |
acataccatgaaagtgtcaccaatattgacaacaaaagcattgaaatttggcctaatggaatgccactcattgtcaacaaaaacttgcaagccaccaact |
22553433 |
T |
|
| Q |
504 |
tggtcttggtgtagaatggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggtttttgacatggtggataataattaagcctca |
603 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
22553434 |
tggtcttggtgtagaatggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggtttttgacatggtgggtaataattaagtctca |
22553533 |
T |
|
| Q |
604 |
ttattgatttattctcttcnnnnnnntctctaaaacaatcttttccaactccaagactcattccaagaagctccattatccccaaagaaagtgtactcat |
703 |
Q |
| |
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| T |
22553534 |
ttattgatttattctcttcaaaaaaatctctaaaacaatcttttccaactccaagactcattccaagaagctccattatccccaaagaaagtgtactcat |
22553633 |
T |
|
| Q |
704 |
tgcttcacaatacttttggtaaacctccctattaatttacc |
744 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
22553634 |
tgcttcacaatacttttggtaaacctccctattaatttacc |
22553674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 841 - 1020
Target Start/End: Original strand, 22553775 - 22553954
Alignment:
| Q |
841 |
gtttttgcctacccaaattcctcaaaatcttcccctaatgtgttgtaaaggtagtctttaacaatatttgttgattttttctcatctgaaaattgaaaag |
940 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
22553775 |
gtttttgcctacccaaattcctcaaaatcttcccctaatgtgttgcaaaggtagtctttaacaatatttggtgagtttttctcatctgaaaattgaaaag |
22553874 |
T |
|
| Q |
941 |
aaagtgtttctttccatggaagttttgaggagaatcttccagtgaaactactagcataaccacaatgttctcctattttc |
1020 |
Q |
| |
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| T |
22553875 |
aaagtgtttctttccatggaagttttgaggagaatcttccagtgaaactactagcataaccacaatgttctcctattttc |
22553954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 2e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 403 - 694
Target Start/End: Complemental strand, 46103549 - 46103258
Alignment:
| Q |
403 |
aacataccatgaaagtgtcaccaatattgacaacaaaagcattgaaatttggcctaatggaatgccattcattgtcaacaaaaacttgcaagccaccaac |
502 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||| |||||||||||||||| || |
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| T |
46103549 |
aacataccatgaaagtatcaccaatattgacaacaaaagcattgaaatgtgggctaatggaatgccattgatcgtcaacataaacttgcaagccacctac |
46103450 |
T |
|
| Q |
503 |
ttggtcttggtgtagaatggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggtttttgacatggtggataataattaagcctc |
602 |
Q |
| |
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||| || ||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| | ||||| ||||| |||||| |
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| T |
46103449 |
ttgatcctggtgaagaatggttaaagatgttggatcacaatgaggtccagtgcctagagtgagctcaggtttttgacaagtaggatagtaattgagcctc |
46103350 |
T |
|
| Q |
603 |
attattgatttattctcttcnnnnnnntctctaaaacaatcttttccaactccaagactcattccaagaagctccattatccccaaagaaag |
694 |
Q |
| |
|
|||||||| |||||||||| || |||||| | |||| ||||||||||| |||||||| |||| ||||||||| || |||||||| |
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| T |
46103349 |
attattgaactattctcttcaaaaaattccctaaaatgagctttaccaactccaaggctcattcctagaatctccattatacctaaagaaag |
46103258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 46104234 - 46104099
Alignment:
| Q |
54 |
caccaattcacttggtggacaaaccaccttatcaccttttggacacaaaaagaaagctagagattttcttgttgtcttgttgttcaccactgccctatgt |
153 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||||| | |||||||||||||||||| |||||||| ||||| | | | |||| |||||||||||||| |
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| T |
46104234 |
caccaattcacatggtggagttaccactttatcacttaatggacacaaaaagaaagcaagagatttccttgtcttttcgctgtttaccactgccctatgc |
46104135 |
T |
|
| Q |
154 |
aaacaactcttgtatctcccatttgaaagagcctaa |
189 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||| |
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| T |
46104134 |
aaacagctcttgtatctcccatttgaaagtgcctaa |
46104099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 907 - 1004
Target Start/End: Complemental strand, 46102748 - 46102651
Alignment:
| Q |
907 |
tttgttgattttttctcatctgaaaattgaaaagaaagtgtttctttccatggaagttttgaggagaatcttccagtgaaactactagcataaccaca |
1004 |
Q |
| |
|
|||| |||||||| ||| |||| |||||||| |||||||| |||||||| ||||| || || |||||||| |||||||||||||||||||||||||| |
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| T |
46102748 |
tttggtgatttttcatcagctgagaattgaaaggaaagtgtctctttccaaggaagcttggaagagaatctgccagtgaaactactagcataaccaca |
46102651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 935 - 1013
Target Start/End: Original strand, 12873931 - 12874009
Alignment:
| Q |
935 |
gaaaagaaagtgtttctttccatggaagttttgaggagaatcttccagtgaaactactagcataaccacaatgttctcc |
1013 |
Q |
| |
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|||||||||||||||| ||||| |||||||| || || ||||||||| |||||||| |||||||||||||||||||||| |
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| T |
12873931 |
gaaaagaaagtgtttccttccaaggaagtttggaagaaaatcttccaatgaaactattagcataaccacaatgttctcc |
12874009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 499 - 589
Target Start/End: Original strand, 12872603 - 12872693
Alignment:
| Q |
499 |
caacttggtcttggtgtagaatggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggtttttgacatggtggata |
589 |
Q |
| |
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||||||| |||||||| ||||||||||| || || || |||||||| |||||||||||||||| | |||||| |||| ||||||||||| |
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| T |
12872603 |
caacttgatcttggtggagaatggttaaggaagtagggtcacaatggggtccagttcctaaagctaaatcaggatttttgcatggtggata |
12872693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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