View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_21 (Length: 667)
Name: NF1343_low_21
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 157 - 660
Target Start/End: Original strand, 14926654 - 14927157
Alignment:
| Q |
157 |
gatgtttcttatgaataagaactggtgaccgagttcctgatttcagtttgtggacaaagagctttgataatttcatttcattttgcaggaaatgatcact |
256 |
Q |
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| T |
14926654 |
gatgtttcttaagaataagaactagtgaccgagttcctgatttcagtttgtggacaaagagctttgataatttcaattcattttgcaggaaatgatcact |
14926753 |
T |
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| Q |
257 |
tctagctctggccatcctccccaaagagtctgtcatctaattgtccaaaatttaatttcttttaataacttcatttatgccataccactttctttaacaa |
356 |
Q |
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| T |
14926754 |
tctagctctgtccatcctccccaaagagtctgtcatctaattgtccaaaatttaatttcttttaataacttcatttatgccataccactttctttaacaa |
14926853 |
T |
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| Q |
357 |
tgttattatactgatttgcttcaaaattttctcctacataacaggagaagaagttcttatatgatattgttgcaaacggtcgcaatggaattgacgttga |
456 |
Q |
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| T |
14926854 |
tgttattatactgatttgcttcaaaattttctcctacataacaggagaagaagttcttatatgatattgttgcaaacggtcgcaatggaattgacgttga |
14926953 |
T |
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| Q |
457 |
caagtaagttgatacttttcaccttttttcctcctgatgtgccactattattgataccgaatcttgtgatcatagaaccataacaaattcaagaatttgc |
556 |
Q |
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| T |
14926954 |
caagtaagttgatacttttcaccttttttcctcctgatgtgccactgttattgataccgaatctcgtgatcatagaaccataacaaattcaagaatttgc |
14927053 |
T |
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| Q |
557 |
agatttgactacattgttcgtgattcacgtgcttgtggcctagggtgcaactttcagccagagaggtgttcatttttattatctaggtggcattattttg |
656 |
Q |
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| T |
14927054 |
agatttgactacattgttcgtgattcacgtgcttgtggcctagggtgcaactttcagccagagaggtgttcatttttattatctaggtcgcattattttg |
14927153 |
T |
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| Q |
657 |
ttgg |
660 |
Q |
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| T |
14927154 |
ttgg |
14927157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 14926498 - 14926611
Alignment:
| Q |
1 |
tcaaaaaagtgaaggttagactcaaattatcaattaaatcttcaatttttctgcgttttttcaaactgaatttccttgatattcttgatgattaccttta |
100 |
Q |
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| T |
14926498 |
tcaaaaaagtgaaggttagactcaaattatcaattaaatcttcaatttttctgcgttttttcaaactgaatttccttgatattcttgatgattaccttta |
14926597 |
T |
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| Q |
101 |
agtttggtcgcaac |
114 |
Q |
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| T |
14926598 |
agtttggtcgcaac |
14926611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 465
Target Start/End: Original strand, 1528297 - 1528352
Alignment:
| Q |
410 |
ttcttatatgatattgttgcaaacggtcgcaatggaattgacgttgacaagtaagt |
465 |
Q |
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||||| ||||||||||||||||| || || |||||||| || |||||||||||||| |
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| T |
1528297 |
ttcttgtatgatattgttgcaaatggacgaaatggaatcgatgttgacaagtaagt |
1528352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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