View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_27 (Length: 629)
Name: NF1343_low_27
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 91 - 600
Target Start/End: Original strand, 38317859 - 38318362
Alignment:
| Q |
91 |
aataatcgttaattacacttgaca------gatgttataagttcaaccttcaaaatacaacttgttaaatat-ttaaaagatgaattttttcatcattat |
183 |
Q |
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| T |
38317859 |
aataatccttaattacacttgacacgattagaggttataaattcaatcttcaaaatacaacgtggtaaatatcttaaaagataaattttttcatctttaa |
38317958 |
T |
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| Q |
184 |
taatattatgtaactcgatgaattaatctctacgattacatagatgaaaatgtnnnnnnnnnnnnnnnnnntacccacatccaccacaatacatcttaaa |
283 |
Q |
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| T |
38317959 |
tagtcgtatataactcgatgaattaatctctacgattacacagatgaaaacgtaaaaaaaaaaaa-------acccacatccaccacaatacatcttaaa |
38318051 |
T |
|
| Q |
284 |
tgaacctatagagtggcgtggtgccttctccaccaactagtcttcatttcttctcacactttccaccatcatcaatttccatcactcttttctatttcat |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38318052 |
tgaacctatagagtggcgtggtgccttctccaccaactagtcttcatttcttctcacactttccaccatcatcaatttccatcactcttttctatttcat |
38318151 |
T |
|
| Q |
384 |
tctt-cccttcaaaaattcatctttcatctttcaaatggctctatatggctctatatcatcaccaaatttaaattggcaaattgggccaaaaaccatatc |
482 |
Q |
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|||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38318152 |
tctttcccttcaaaaattca-------tctttcatatggctctatatggctctatatcatcaccaaatttaaattggcaaattgggccaaaaaccatatc |
38318244 |
T |
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| Q |
483 |
aaaatcaacctcttcttctatgaactcatatacaacaatttcattatcattttctagtagcgtttcaatgggtcttaacttgaggttcaatcttgcttcc |
582 |
Q |
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| T |
38318245 |
aaaatcaacctcttcttctatgaactcatatacaacaatttcattatcattttctagtagcgtttcaatgggtcttaacttgaggttcaatcttgcttcc |
38318344 |
T |
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| Q |
583 |
ccttcaactcgtgctgct |
600 |
Q |
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|||||||||||||||||| |
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| T |
38318345 |
ccttcaactcgtgctgct |
38318362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 38317800 - 38317849
Alignment:
| Q |
9 |
caagaatattcttacacaccaatattttattgatttatcattaataatta |
58 |
Q |
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| T |
38317800 |
caagaatattcttacacaccaatattttattgatttatcattaataatta |
38317849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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