View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1343_low_29 (Length: 621)
Name: NF1343_low_29
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_29 |
 |  |
|
Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 29)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 104 - 546
Target Start/End: Complemental strand, 31494303 - 31493870
Alignment:
| Q |
104 |
cttgttgtatcattcattgatacccatgatcatccgaattcggatgtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttatt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31494303 |
cttgttgtatcattcattgatacccatgatcatccgaattcggatgtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttatt |
31494204 |
T |
 |
| Q |
204 |
ggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggtaattcttttcactcttttcagtttcatcatct |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31494203 |
ggattgctttgttatgctctaagctcttcgttcaaccatctatttggaaattggaatttgttgaaggtaattcttttca---------gtttcatcatct |
31494113 |
T |
 |
| Q |
304 |
tcctcatgatcttgtatgcacatatatggcaaaactctagaagtcttcggttcaaagctcatacagcttttcttgtattaacaatcacatctgtgtattc |
403 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
31494112 |
gcctcatgattttgtatgcacatatatggcaaaactcaagaaggcttcggttcaaagctcatacagcttttctggtattaacaatcacctctgtctattc |
31494013 |
T |
 |
| Q |
404 |
atttttctttgataaagtggtgaatggaaaaccagatgtatatagtctaataacatgtgctgcctttcctatcatgtcgcttagcttgtcgagccaaatt |
503 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31494012 |
atttttctttggtaaagtggtgaatggaaaaccagatgcatatagtctaataacatgtgctgcctttgctatcatgtcgcttagcttgtcgagccaaatt |
31493913 |
T |
 |
| Q |
504 |
cagtgcggatttgaagtcgatcttatgtacttttacctaggat |
546 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31493912 |
cagtgcggatttgaagtcgatcttatttacttttacctaggat |
31493870 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 121 - 550
Target Start/End: Complemental strand, 31416709 - 31416280
Alignment:
| Q |
121 |
tgatacccatgatcatccgaattcggatgtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgc |
220 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||||||| | ||||||||||||||||||| |||||||||| |||| | ||||| || |||||||||| |
|
|
| T |
31416709 |
tgataccgctgatcatccaaattcggtgttggctgttggaaacaaaagtgtggagatttgtaggctttgtttccgctgctgttggactgatttgttatgc |
31416610 |
T |
 |
| Q |
221 |
tctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggtaattcttttcactcttttcagtttcatcatcttcctcatgatcttgtat |
320 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| |||| |||||| |
|
|
| T |
31416609 |
tctaagctcttctttcaaccatctatttggaaattggaatttgttgaaggtaattctttatactctttccagtttcatcatctgcctcctgattttgtat |
31416510 |
T |
 |
| Q |
321 |
gcacatatatggcaaaactctagaagtcttcggttcaaagctcatacagcttttcttgtattaacaatcacatctgtgtattcatttttctttgataaag |
420 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
31416509 |
gcaaatacatggcaaaactctagaagtcttcggttcaaagctcatacagcttttctagtattgacaatcactgctgtctattcatttttctctgataaaa |
31416410 |
T |
 |
| Q |
421 |
tggtgaatggaaaaccagatgtatatagtctaataacatgtgctgcctttcctatcatgtcgcttagcttgtcgagccaaattcagtgcggatttgaagt |
520 |
Q |
| |
|
| |||||||||||||||||| ||||| |||||| | ||| || | ||| |||| ||||| |||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
31416409 |
ttatgaatggaaaaccagatgcatatactctaatttcgtgtacttctttttctatgatgtcacttagcttgtcgaggcaaattcagtgtggatttgaagt |
31416310 |
T |
 |
| Q |
521 |
cgatcttatgtacttttacctaggatgttt |
550 |
Q |
| |
|
||||||||||||||||| ||||||||||| |
|
|
| T |
31416309 |
tgatcttatgtacttttatctaggatgttt |
31416280 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 121 - 548
Target Start/End: Complemental strand, 31407576 - 31407158
Alignment:
| Q |
121 |
tgatacccatgatcatccgaattcggatgtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgc |
220 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||| |||||| |||||||| | |||||||||| |||||||| |
|
|
| T |
31407576 |
tgatacccgtgatcatccgaattcggatgtgcctgttgcagacaaaagtgtggagatttgtgggctttgcttcagctgctgttggattgctctgttatgc |
31407477 |
T |
 |
| Q |
221 |
tctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggtaattcttttcactcttttcagtttcatcatcttcctcatgatcttgtat |
320 |
Q |
| |
|
||| ||| |||| || ||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
31407476 |
tctcagcacttccttcaaccatctatttggaaattggaatttgttgaagatatttctttacactcttttcagtttcatcat---------gattttgtat |
31407386 |
T |
 |
| Q |
321 |
gcacatatatggcaaaactctagaagtcttcggttcaaagctcatacagcttttcttgtattaacaatcacatctgtgtattcatttttctttgataaag |
420 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
31407385 |
gcaaatatatggaaaaactctagaagtcttcggttcaaagctcatacagcttttttagtattgacaatcacctctgtctattcatttttctttgataaag |
31407286 |
T |
 |
| Q |
421 |
tggtgaatggaaaaccagatgtatatagtctaataacatgtgctgcctttcctatcatgtcgcttagcttgtcgagccaaattcagtgcggatttgaagt |
520 |
Q |
| |
|
||||||||||||||||||||| |||||| | || ||||||| |||||| |||||||||| | |||||||| || ||| |||||| ||| | ||||| |
|
|
| T |
31407285 |
tggtgaatggaaaaccagatgcatatagcttgatttcatgtgccgcctttgctatcatgtcaatgagcttgtcaaggcaatctcagtgtggaatcgaagt |
31407186 |
T |
 |
| Q |
521 |
cgatcttatgtacttttacctaggatgt |
548 |
Q |
| |
|
|||||| | ||||||| ||| |||||| |
|
|
| T |
31407185 |
ggatcttctttactttttccttggatgt |
31407158 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 140 - 537
Target Start/End: Complemental strand, 31476085 - 31475688
Alignment:
| Q |
140 |
aattcggatgtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaac |
239 |
Q |
| |
|
||||| || ||||||| || || |||| || ||||||||||| |||||| |||||||| | ||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
31476085 |
aattcagaggtggctgatgcagacaaaggtatggagatttgtgggctttgcttcagctgctgttggactgctttgttatgctctaagctcttcctttaac |
31475986 |
T |
 |
| Q |
240 |
catctatttggaaattggaatttgttgaaggtaattcttttcactcttttcagtttcatcatcttcctcatgatcttgtatgcacatatatggcaaaact |
339 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||| |||| |||||||||||||||| | | ||||||| ||||||| | |||||||| || | | |
|
|
| T |
31475985 |
tatctatttggaaactggaatttgttgaagataattctttacactgttttcagtttcatcatttgcatcatgattttgtatgaaaatatatggaaacagt |
31475886 |
T |
 |
| Q |
340 |
ctagaagtcttcggttcaaagctcatacagcttttcttgtattaacaatcacatctgtgtattcatttttctttgataaagtggtgaatggaaaaccaga |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||| |||||||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
31475885 |
ctagaagtcttcggttcaaagctcatacagcttttttagtattgacaatcacctctgtctattcattttacttcgataaagtggtaaatggaaaaccaga |
31475786 |
T |
 |
| Q |
440 |
tgtatatagtctaataacatgtgctgcctttcctatcatgtcgcttagcttgtcgagccaaattcagtgcggatttgaagtcgatcttatgtactttt |
537 |
Q |
| |
|
|| ||||| || || | |||||||||||| |||||||||| || || || ||||| ||| |||||| ||||| ||||| |||||| | ||||||| |
|
|
| T |
31475785 |
tgcttatagcctcatttcttgtgctgcctttgctatcatgtcactgagtttctcgaggcaatctcagtgtggattcgaagtggatcttctttactttt |
31475688 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 149 - 537
Target Start/End: Complemental strand, 40843458 - 40843070
Alignment:
| Q |
149 |
gtggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctattt |
248 |
Q |
| |
|
|||||||||| || |||| || ||||||||||| | |||| |||||||| | ||||| || |||||||||||||||||||||| || ||| |||||||| |
|
|
| T |
40843458 |
gtggctgttgcagacaaaggtatggagatttgtgggatttgcttcagctgctgttggactggtttgttatgctctaagctcttccttcaactatctattt |
40843359 |
T |
 |
| Q |
249 |
ggaaattggaatttgttgaaggtaattcttttcactcttttcagtttcatcatcttcctcatgatcttgtatgcacatatatggcaaaactctagaagtc |
348 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| |||||||||||||||| | | ||||||| ||||||| | |||||||| || | |||||||||| |
|
|
| T |
40843358 |
ggaaattggaatttgttgaagataattctttacactgttttcagtttcatcatttgcatcatgattttgtatgaaaatatatggaaacagtctagaagtc |
40843259 |
T |
 |
| Q |
349 |
ttcggttcaaagctcatacagcttttcttgtattaacaatcacatctgtgtattcatttttctttgataaagtggtgaatggaaaaccagatgtatatag |
448 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| |||||||| ||||| ||||| |||| ||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
40843258 |
ttcggttcaaagctcatacagcttttttagtattgacaatcacctctgtctattcgttttacttcgataaagtggtaaatggaaaaccagatgcttatag |
40843159 |
T |
 |
| Q |
449 |
tctaataacatgtgctgcctttcctatcatgtcgcttagcttgtcgagccaaattcagtgcggatttgaagtcgatcttatgtactttt |
537 |
Q |
| |
|
|| || | |||||||||||| |||||||||| || || |||||||| ||| ||| || ||||| ||||| |||||| | ||||||| |
|
|
| T |
40843158 |
cctcatttcttgtgctgcctttgctatcatgtcactgagtttgtcgaggcaatctcattgtggattcgaagtggatcttctttactttt |
40843070 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 171 - 550
Target Start/End: Original strand, 31395737 - 31396116
Alignment:
| Q |
171 |
tggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaagg |
270 |
Q |
| |
|
|||||||||||| | | || |||||||||| ||||| | ||||||||||||| |||||||| || || |||||||||||||| |||| |||| |||| |
|
|
| T |
31395737 |
tggagatttgttggatgtgcttcagctgttgttggacttgtttgttatgctctcagctcttccttcaatcatctatttggaaactggagattgtggaaga |
31395836 |
T |
 |
| Q |
271 |
taattcttttcactcttttcagtttcatcatcttcctcatgatcttgtatgcacatatatggcaaaactctagaagtcttcggttcaaagctcatacagc |
370 |
Q |
| |
|
|| |||||| ||| |||||||||||||||||| | ||| || ||||||||| | ||||||| |||| | |||| ||| |||||||||||| |||| |
|
|
| T |
31395837 |
tagttctttacacagttttcagtttcatcatctgctccataattttgtatgcaagaacatggcaacactcgactagtcatcgattcaaagctcattcagc |
31395936 |
T |
 |
| Q |
371 |
ttttcttgtattaacaatcacatctgtgtattcatttttctttgataaagtggtgaatggaaaaccagatgtatatagtctaataacatgtgctgccttt |
470 |
Q |
| |
|
||||| ||||| ||||| || ||| | ||||| ||||||| |||||| | |||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
31395937 |
gtttctggtattgacaattacctctatttattcctttttctcagataaaattatgaatggaaaaccagatgcatatagtctaatttcatgtgctgccttt |
31396036 |
T |
 |
| Q |
471 |
cctatcatgtcgcttagcttgtcgagccaaattcagtgcggatttgaagtcgatcttatgtacttttacctaggatgttt |
550 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
31396037 |
tctatgatgtcacttagcttgtcgaggcaaattcagtgtggatttgaagtggatcttatgtacttttatctcggatgttt |
31396116 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 171 - 548
Target Start/End: Complemental strand, 31643993 - 31643616
Alignment:
| Q |
171 |
tggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaagg |
270 |
Q |
| |
|
||||||||||| |||||| |||| || || ||||| | |||||||||||||| |||||||| || ||| ||||||||||| |||||||| |||||||| |
|
|
| T |
31643993 |
tggagatttgtgggctttgcttcatctattgttggactactttgttatgctcttagctcttccttcaactatctatttggagattggaatctgttgaaga |
31643894 |
T |
 |
| Q |
271 |
taattcttttcactcttttcagtttcatcatcttcctcatgatcttgtatgcacatatatggcaaaactctagaagtcttcggttcaaagctcatacagc |
370 |
Q |
| |
|
| | |||| || ||||||||||||||||| ||||||||| || | |||| | || |||||| ||| |||||| |||| |||||||| || ||||| |
|
|
| T |
31643893 |
ttttcctttacagcgttttcagtttcatcatcagcctcatgattttatttgcaaaaatgtggcaaccctcaagaagtattcgattcaaagcacacacagc |
31643794 |
T |
 |
| Q |
371 |
ttttcttgtattaacaatcacatctgtgtattcatttttctttgataaagtggtgaatggaaaaccagatgtatatagtctaataacatgtgctgccttt |
470 |
Q |
| |
|
| | | |||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||| |||||| || || | |||||| ||||| |
|
|
| T |
31643793 |
atatttggtattaacaatcacttcgttatattcatttttctttgataaagtggtgaatggaaaaccagatgcatatagcctcatttcttgtgcttccttt |
31643694 |
T |
 |
| Q |
471 |
cctatcatgtcgcttagcttgtcgagccaaattcagtgcggatttgaagtcgatcttatgtacttttacctaggatgt |
548 |
Q |
| |
|
|||||||||| ||||| ||||||| |||| | |||||||||||||| |||||||| | ||||||| ||| |||||| |
|
|
| T |
31643693 |
gctatcatgtcacttagtttgtcgacgcaaactgagtgcggatttgaattcgatcttctttactttttccttggatgt |
31643616 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 163 - 550
Target Start/End: Original strand, 31284687 - 31285074
Alignment:
| Q |
163 |
caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt |
262 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||| ||||||| ||||||||||||||||||||||||| || ||| |||| |||||| | |||||| | |
|
|
| T |
31284687 |
caaaagtgtggagatttgtgggctttgcttcatctgctattggactgctttgttatgctctaagctcttccttcaactatctctttggagactggaatct |
31284786 |
T |
 |
| Q |
263 |
gttgaaggtaattcttttcactcttttcagtttcatcatcttcctcatgatcttgtatgcacatatatggcaaaactctagaagtcttcggttcaaagct |
362 |
Q |
| |
|
| ||||| |||| || | || ||||||| ||||||||| | | || | |||| |||| || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
31284787 |
gctgaagataatcctctacagcattttcagcttcatcatcagcttggtggttttgtttgcaaggatgtggcaaaactcgagaagtcttcggttcaaagct |
31284886 |
T |
 |
| Q |
363 |
catacagcttttcttgtattaacaatcacatctgtgtattcatttttctttgataaagtggtgaatggaaaaccagatgtatatagtctaataacatgtg |
462 |
Q |
| |
|
||| | || ||| | ||||| |||||||| || | ||||||||||||||||||||||| || |||||||||||||||| |||||| || || |||||| |
|
|
| T |
31284887 |
catgctgcgtttttggtattgacaatcacctcattatattcatttttctttgataaagtagttaatggaaaaccagatgcatatagcctcatttcatgtg |
31284986 |
T |
 |
| Q |
463 |
ctgcctttcctatcatgtcgcttagcttgtcgagccaaattcagtgcggatttgaagtcgatcttatgtacttttacctaggatgttt |
550 |
Q |
| |
|
|| ||||| ||||||||| | || ||||| | |||| ||| |||||||||||||||||| || | ||||||| || |||||||| |
|
|
| T |
31284987 |
cttccttttctatcatgttaatgagtttgtcacggcaaactcaatgcggatttgaagtcgattttctttacttttttctcggatgttt |
31285074 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 163 - 548
Target Start/End: Original strand, 31317328 - 31317713
Alignment:
| Q |
163 |
caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt |
262 |
Q |
| |
|
|||| |||||||||||||| |||||| |||| || || ||||| | |||| ||||| |||||||||| |||||| |||| |||||| | |||||||| |
|
|
| T |
31317328 |
caaaggtgtggagatttgtgggctttgcttcatctcttgttggacttgtttgctatgcattaagctcttcctttaactatctctttggagaatggaattt |
31317427 |
T |
 |
| Q |
263 |
gttgaaggtaattcttttcactcttttcagtttcatcatcttcctcatgatcttgtatgcacatatatggcaaaactctagaagtcttcggttcaaagct |
362 |
Q |
| |
|
|||||| || |||||| || ||||||||||||||||| | | |||| || | |||| | | || |||| | ||||| |||||||| ||||||||| |
|
|
| T |
31317428 |
gttgaaaatatttctttacagcgctttcagtttcatcatctgcttggtgattttatttgcaaagaaattgcaacattctagcagtcttcgattcaaagct |
31317527 |
T |
 |
| Q |
363 |
catacagcttttcttgtattaacaatcacatctgtgtattcatttttctttgataaagtggtgaatggaaaaccagatgtatatagtctaataacatgtg |
462 |
Q |
| |
|
||| | || ||||| ||||| ||| |||| || | ||||| ||||||||||||||||| ||||||| |||||||||| ||||||| |||| |||||| |
|
|
| T |
31317528 |
cattcggcatttctggtattgacactcacttcaatctattcctttttctttgataaagtcatgaatgggaaaccagatgcatatagtttaatttcatgtg |
31317627 |
T |
 |
| Q |
463 |
ctgcctttcctatcatgtcgcttagcttgtcgagccaaattcagtgcggatttgaagtcgatcttatgtacttttacctaggatgt |
548 |
Q |
| |
|
|||||||| |||| ||||| ||||| ||||| || |||| |||||| ||||||||| | |||||| | || |||| ||| |||||| |
|
|
| T |
31317628 |
ctgcctttgctattatgtcacttagtttgtcaaggcaaactcagtggggatttgaaattgatcttctttattttttcctgggatgt |
31317713 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 163 - 537
Target Start/End: Complemental strand, 31279606 - 31279232
Alignment:
| Q |
163 |
caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt |
262 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| |||| ||||| || ||||||||||||| |||||||| || ||| |||| |||||| | |||||||| |
|
|
| T |
31279606 |
caaaagtgtggagatttgtaggctttgcttcagttgttgttggactggtttgttatgctctcagctcttccttcaactatctctttggagaatggaattt |
31279507 |
T |
 |
| Q |
263 |
gttgaaggtaattcttttcactcttttcagtttcatcatcttcctcatgatcttgtatgcacatatatggcaaaactctagaagtcttcggttcaaagct |
362 |
Q |
| |
|
|||||| | | |||| | ||||||| |||||||| | | | | || | || | ||||||||| | |||| ||||||||||| |||||||| |
|
|
| T |
31279506 |
cttgaagattttcctttacggcgttttcagcttcatcattagcttggtcgttttatttgtaaatatatggcgacactcaagaagtcttcgattcaaagca |
31279407 |
T |
 |
| Q |
363 |
catacagcttttcttgtattaacaatcacatctgtgtattcatttttctttgataaagtggtgaatggaaaaccagatgtatatagtctaataacatgtg |
462 |
Q |
| |
|
|| ||||| | | | ||||| ||||| || || | |||||||||||||| |||||| || ||||||| ||||| |||| |||||| || || |||||| |
|
|
| T |
31279406 |
cacacagcatatttggtattgacaatgacctcgctatattcatttttcttcgataaattgatgaatgggaaacctgatggatatagcctcatttcatgtg |
31279307 |
T |
 |
| Q |
463 |
ctgcctttcctatcatgtcgcttagcttgtcgagccaaattcagtgcggatttgaagtcgatcttatgtactttt |
537 |
Q |
| |
|
|| ||||| |||||||||| ||||| |||||| | |||| |||||||||||||||||| |||||| | ||||||| |
|
|
| T |
31279306 |
cttcctttgctatcatgtcacttagtttgtcgcggcaaactcagtgcggatttgaagttgatcttctttactttt |
31279232 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 165 - 527
Target Start/End: Original strand, 31281405 - 31281766
Alignment:
| Q |
165 |
aaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgt |
264 |
Q |
| |
|
|||||||| || ||||| |||||| |||||||||| ||||| | |||||||||||| |||||||||| || || |||| |||||| |||||||||||| |
|
|
| T |
31281405 |
aaagtgtgcaggtttgtaggctttgcttcagctgttcttggacttctttgttatgctttaagctcttccttcaattatctctttggagattggaatttgt |
31281504 |
T |
 |
| Q |
265 |
tgaaggtaattcttttcactcttttcagtttcatcatcttcctcatgatcttgtatgcacatatatggcaaaactctagaagtcttcggttcaaagctca |
364 |
Q |
| |
|
||||| | | |||| | ||||||| |||||||| | | | | || | |||| ||||||||| | |||| ||||||||||| |||||||| || |
|
|
| T |
31281505 |
tgaagattttcctttacggcgttttcagcttcatcattagcttggtcgttttatttgcaaatatatggcgacactcaagaagtcttcgcttcaaagcaca |
31281604 |
T |
 |
| Q |
365 |
tacagcttttcttgtattaacaatcacatctgtgtattcatttttctttgataaagtggtgaatggaaaaccagatgtatatagtctaataacatgtgct |
464 |
Q |
| |
|
| || | | | |||||||||||||| || ||||||| |||||||||||||||||| |||||||||||||||||| ||| |||||||| ||||||| |
|
|
| T |
31281605 |
ctcggcatat-tggtattaacaatcacttcgctgtattcctttttctttgataaagtgatgaatggaaaaccagatgcatacagtctaatttcatgtgcc |
31281703 |
T |
 |
| Q |
465 |
gcctttcctatcatgtcgcttagcttgtcgagccaaattcagtgcggatttgaagtcgatctt |
527 |
Q |
| |
|
|||||| |||||||||| || || |||| || |||| |||||||||||| | ||| |||||| |
|
|
| T |
31281704 |
gcctttgctatcatgtcactaagtttgttaaggcaaactcagtgcggattcgtagtggatctt |
31281766 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 163 - 487
Target Start/End: Original strand, 31368542 - 31368866
Alignment:
| Q |
163 |
caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt |
262 |
Q |
| |
|
|||| |||||||||||||| |||||| |||| || || ||||| | |||| |||||| |||||||||| |||||| |||| |||||| | || ||||| |
|
|
| T |
31368542 |
caaaggtgtggagatttgtgggctttgcttcatctcttgttggacttgtttgctatgctttaagctcttcctttaactatctctttggagaatgaaattt |
31368641 |
T |
 |
| Q |
263 |
gttgaaggtaattcttttcactcttttcagtttcatcatcttcctcatgatcttgtatgcacatatatggcaaaactctagaagtcttcggttcaaagct |
362 |
Q |
| |
|
|||||| || |||||| || | ||||||||||||||| | | |||| || | |||||| | || |||| | ||||||||||| || ||||||||| |
|
|
| T |
31368642 |
gttgaaaatatttctttacagcgctgtcagtttcatcatctgcttggtgattttatttgcacagaaattgcaacattctagaagtctccgattcaaagct |
31368741 |
T |
 |
| Q |
363 |
catacagcttttcttgtattaacaatcacatctgtgtattcatttttctttgataaagtggtgaatggaaaaccagatgtatatagtctaataacatgtg |
462 |
Q |
| |
|
||| | || ||||| ||||| ||| |||| | | ||||| ||||||| | ||||||| ||||||| |||||||||| |||||||||||| |||||| |
|
|
| T |
31368742 |
cattcggcatttctggtattgacactcactttaatctattcctttttctctaataaagtcatgaatgggaaaccagatgcatatagtctaatttcatgtg |
31368841 |
T |
 |
| Q |
463 |
ctgcctttcctatcatgtcgcttag |
487 |
Q |
| |
|
|||||||| |||| ||||| ||||| |
|
|
| T |
31368842 |
ctgcctttgctattatgtcacttag |
31368866 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 548 - 611
Target Start/End: Complemental strand, 31493496 - 31493433
Alignment:
| Q |
548 |
tttcttacaccagatgcagggttagatagttgggtcaatggtggaattcatccgatgatctgtg |
611 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31493496 |
tttcttacactagatgcagggttagatagttgggtcaatggtggaattcatccgatgctctgtg |
31493433 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 191 - 269
Target Start/End: Complemental strand, 31505989 - 31505911
Alignment:
| Q |
191 |
ttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaag |
269 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || ||||| |||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
31505989 |
ttcagctgttgttggattgctttgttatgctctcagttcttcctttatccatctatttggaaattggaattggttgaag |
31505911 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 163 - 303
Target Start/End: Original strand, 31332169 - 31332309
Alignment:
| Q |
163 |
caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt |
262 |
Q |
| |
|
|||| ||||||||||||||| |||||| |||| ||||| ||||| |||||||||||||| |||||||||| || ||| | || |||||| | |||||||| |
|
|
| T |
31332169 |
caaaggtgtggagatttgttggctttgcttcatctgttgttggactgctttgttatgctttaagctcttccttcaactacctctttggagaatggaattt |
31332268 |
T |
 |
| Q |
263 |
gttgaaggtaattcttttcactcttttcagtttcatcatct |
303 |
Q |
| |
|
|||||| || |||| | || | ||||||||||||||||| |
|
|
| T |
31332269 |
gttgaaaatatttctctacagtgctttcagtttcatcatct |
31332309 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 213 - 298
Target Start/End: Complemental strand, 31463090 - 31463005
Alignment:
| Q |
213 |
tgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggtaattcttttcactcttttcagtttcat |
298 |
Q |
| |
|
||||||||| |||||||||| || ||||||||||||||||||||||| ||||||||| | ||||| | |||| ||||||||||||| |
|
|
| T |
31463090 |
tgttatgctgtaagctcttccttcaaccatctatttggaaattggaacttgttgaagattattctctacactgttttcagtttcat |
31463005 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 396 - 550
Target Start/End: Complemental strand, 31505784 - 31505630
Alignment:
| Q |
396 |
gtgtattcatttttctttgataaagtggtgaatggaaaaccagatgtatatagtctaataacatgtgctgcctttcctatcatgtcgcttagcttgtcga |
495 |
Q |
| |
|
|||||||| ||||||| |||||| || | ||||| |||||||||| |||||| || || || ||||| ||||| ||||||||||||| || |||||| |
|
|
| T |
31505784 |
gtgtattcctttttctccgataaaatgattaatgggaaaccagatgcatatagcctcatttcaagtgcttcctttgctatcatgtcgctcagtttgtcgc |
31505685 |
T |
 |
| Q |
496 |
gccaaattcagtgcggatttgaagtcgatcttatgtacttttacctaggatgttt |
550 |
Q |
| |
|
| |||| ||||||||||||||| || |||||| | ||||||| || |||||||| |
|
|
| T |
31505684 |
ggcaaactcagtgcggatttgaggtggatcttctttacttttttctcggatgttt |
31505630 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 327 - 451
Target Start/End: Original strand, 31288620 - 31288742
Alignment:
| Q |
327 |
atatggcaaaactctagaagtcttcggttcaaagctcatacagcttttcttgtattaacaatcacatctgtgtattcatttttctttgataaagtggtga |
426 |
Q |
| |
|
|||||| || |||| |||| | |||||||||||||||| |||||||| | ||||| |||||||| || |||||||||||||||| |||||||| |||| |
|
|
| T |
31288620 |
atatggaaacactcaagaactattcggttcaaagctcagacagctttcttggtatttacaatcacctcactgtattcatttttcttcgataaagtagtga |
31288719 |
T |
 |
| Q |
427 |
atggaaaaccagatgtatatagtct |
451 |
Q |
| |
|
|| ||||||| ||| ||||||||| |
|
|
| T |
31288720 |
at--aaaaccatatgcatatagtct |
31288742 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 301
Target Start/End: Original strand, 31329924 - 31330032
Alignment:
| Q |
193 |
cagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggtaattcttttcactcttttcag |
292 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||| || ||||| || ||| |||| |||||| ||||||||||||| ||| ||||||||| |||| ||||||| |
|
|
| T |
31329924 |
cagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaatttgttcaagataattctttacactgttttcag |
31330023 |
T |
 |
| Q |
293 |
tttcatcat |
301 |
Q |
| |
|
|||||||| |
|
|
| T |
31330024 |
cttcatcat |
31330032 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 303
Target Start/End: Original strand, 31380954 - 31381094
Alignment:
| Q |
163 |
caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt |
262 |
Q |
| |
|
|||| ||||||||||||||| |||||| |||| ||||| ||||| |||||||||||||| | |||||||| || || | || |||||| | |||||||| |
|
|
| T |
31380954 |
caaaggtgtggagatttgttggctttgcttcatctgttgttggactgctttgttatgctttgagctcttccttcaattacctctttggagaatggaattt |
31381053 |
T |
 |
| Q |
263 |
gttgaaggtaattcttttcactcttttcagtttcatcatct |
303 |
Q |
| |
|
|||||| || |||| | || | ||||||||||||||||| |
|
|
| T |
31381054 |
gttgaaaatatttctctacagtgctttcagtttcatcatct |
31381094 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 303
Target Start/End: Original strand, 31483655 - 31483787
Alignment:
| Q |
171 |
tggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaagg |
270 |
Q |
| |
|
||||||||||| | ||||||||| | |||||||| | || | ||| |||||||||||||| || || ||| ||| |||||| |||| |||||||||| |
|
|
| T |
31483655 |
tggagatttgtgtgttttgtttcatccattattggactactcttttacgctctaagctcttccttcaatcatatatgtggaaagtggagtttgttgaaga |
31483754 |
T |
 |
| Q |
271 |
taattcttttcactcttttcagtttcatcatct |
303 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||| |
|
|
| T |
31483755 |
taattctttacactgttttcagtttcattatct |
31483787 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 186 - 340
Target Start/End: Complemental strand, 31387898 - 31387744
Alignment:
| Q |
186 |
tttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggtaattcttttcactc |
285 |
Q |
| |
|
||||||||| ||||| ||||| |||||||||||||||| |||||||| || | ||||||||||| || ||||| || || |||||| |||||| | |
|
|
| T |
31387898 |
tttgtttcatctgttgttggactgctttgttatgctcttagctcttccttcactcatctatttgggaactggaacttttttaaggtatttctttatagca |
31387799 |
T |
 |
| Q |
286 |
ttttcagtttcatcatcttcctcatgatcttgtatgcacatatatggcaaaactc |
340 |
Q |
| |
|
||||||||||| | |||| ||||| ||||||| |||| | | |||||||||||| |
|
|
| T |
31387798 |
ttttcagtttcgttatctgcctcaccatcttgtttgcaaacaaatggcaaaactc |
31387744 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 298
Target Start/End: Complemental strand, 31390942 - 31390815
Alignment:
| Q |
171 |
tggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaagg |
270 |
Q |
| |
|
||||||||||| || ||| ||| || ||||||| || || |||||||||||||| ||||| || ||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
31390942 |
tggagatttgtgagttttacatcatcttttattggcttcctctgttatgctctaagttcttccttcaaccatctatttggaaactggaacttgttaaaga |
31390843 |
T |
 |
| Q |
271 |
taattcttttcactcttttcagtttcat |
298 |
Q |
| |
|
| |||| | |||| ||||||||||||| |
|
|
| T |
31390842 |
tttttctgtacactgttttcagtttcat |
31390815 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 163 - 301
Target Start/End: Original strand, 31378676 - 31378814
Alignment:
| Q |
163 |
caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt |
262 |
Q |
| |
|
|||| |||||||||||| | | |||| | |||||||| ||||| ||||||| ||||||| || ||||| || ||| |||| |||||| |||||||||| |
|
|
| T |
31378676 |
caaaggtgtggagatttctgggatttgctgcagctgttgttggactgctttgcaatgctctcagttcttccttcaactatctctttggagattggaattt |
31378775 |
T |
 |
| Q |
263 |
gttgaaggtaattcttttcactcttttcagtttcatcat |
301 |
Q |
| |
|
||| ||| ||||||| | ||| ||||||| |||||||| |
|
|
| T |
31378776 |
gttcaagataattctctatactgttttcagcttcatcat |
31378814 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 31288456 - 31288562
Alignment:
| Q |
163 |
caaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaattt |
262 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| ||||| |||| | ||||| |||| ||||||| || || |||| | |||| | |||||| | |
|
|
| T |
31288456 |
caaaagtgtggagatttgtaggctttgcttcagctgttgttggactgctctattatggtctatgctcttccttcaattatctctctggagactggaatct |
31288555 |
T |
 |
| Q |
263 |
gttgaag |
269 |
Q |
| |
|
||||||| |
|
|
| T |
31288556 |
gttgaag |
31288562 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 31465045 - 31464975
Alignment:
| Q |
202 |
ttggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggta |
272 |
Q |
| |
|
||||| |||| ||||| ||||||||| |||| || || |||||||||||||| |||||||| ||||||||| |
|
|
| T |
31465045 |
ttggactgctatgttacgctctaagcccttccttcaatcatctatttggaaagtggaatttattgaaggta |
31464975 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 173 - 318
Target Start/End: Complemental strand, 31384493 - 31384348
Alignment:
| Q |
173 |
gagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggta |
272 |
Q |
| |
|
|||||||||| | ||||||||| | || |||| || ||| ||||||||| |||||||| || || ||||||||||| || ||||| || || ||| || |
|
|
| T |
31384493 |
gagatttgtttgttttgtttcatcaattgttggtctgttttattatgctcttagctcttccttcaatcatctatttgggaaatggaactttttcaagtta |
31384394 |
T |
 |
| Q |
273 |
attcttttcactcttttcagtttcatcatcttcctcatgatcttgt |
318 |
Q |
| |
|
|||||| || ||||||||||||| |||||||||| ||||||| |
|
|
| T |
31384393 |
tttctttataccattttcagtttcattatcttcctcacaatcttgt |
31384348 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 527
Target Start/End: Original strand, 31330061 - 31330264
Alignment:
| Q |
327 |
atatggcaaaactctagaagtcttcggttcaaagctcatacagcttttcttgtattaacaatcacatctgtgtattcatttttctttgataaagtggtga |
426 |
Q |
| |
|
||||||||| |||| ||||||| | ||||| |||| |||||| | | | ||||||| ||||||| || | ||||||| ||| ||||||||| | || |
|
|
| T |
31330061 |
atatggcaacactcaagaagtcgttggttccaagcgcatacaacatatgttgtattggcaatcacgtcgctatattcatatttttttgataaattaatgc |
31330160 |
T |
 |
| Q |
427 |
atggaaaaccagatgtatatagtctaataacatgtgctgcctttcctatcatgtcgcttagcttgtcgag---ccaaattcagtgcggatttgaagtcga |
523 |
Q |
| |
|
|| || |||||||| ||||||||| || ||||||| ||||| || ||| | ||||||| |||||||| | ||| ||| |||||||||||| |||| |
|
|
| T |
31330161 |
atataacaccagatgcatatagtctcatttcatgtgcatcctttgctgtcacggcgcttagtttgtcgaggaacaaaactcaatgcggatttgaaatcga |
31330260 |
T |
 |
| Q |
524 |
tctt |
527 |
Q |
| |
|
|||| |
|
|
| T |
31330261 |
tctt |
31330264 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 31460440 - 31460371
Alignment:
| Q |
208 |
tgctttgttatgctctaagctcttcgtttaaccatctatttggaaattggaatttgttgaaggtaattct |
277 |
Q |
| |
|
|||||||||||||||| |||||||| || || ||||||||||| || ||||| || || |||||| |||| |
|
|
| T |
31460440 |
tgctttgttatgctcttagctcttccttcaatcatctatttgggaactggaacttttttaaggtacttct |
31460371 |
T |
 |
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Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 289 - 433
Target Start/End: Complemental strand, 6037967 - 6037823
Alignment:
| Q |
289 |
tcagtttcatcatcttcctcatgatcttgtatgcacatatatggcaaaactctagaagtcttcggttcaaagctcatacagcttttcttg-tattaacaa |
387 |
Q |
| |
|
||||||||||||||| |||||||| || |||||| |||||||| | |||||||||||||| |||||||| |||||||||||| |||| |||| |||| |
|
|
| T |
6037967 |
tcagtttcatcatctggctcatgattttatatgcaaatatatggaaccactctagaagtcttttgttcaaagttcatacagcttt-cttgatattgacaa |
6037869 |
T |
 |
| Q |
388 |
tcacatctgtgtattcatttttctttgataaagtggtgaatggaaa |
433 |
Q |
| |
|
||||||| || || ||||||||||| |||||||| |||||||||| |
|
|
| T |
6037868 |
tcacatcagtctactcatttttcttcaataaagtgatgaatggaaa |
6037823 |
T |
 |
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Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 354 - 534
Target Start/End: Original strand, 8039298 - 8039478
Alignment:
| Q |
354 |
ttcaaagctcatacagcttttcttgtattaacaatcacatctgtgtattcatttttctttgataaagtggtgaatggaaaaccagatgtatatagtctaa |
453 |
Q |
| |
|
|||||||||||| |||| ||| | |||| ||||| || ||||| ||||| ||||||| ||||||| | ||||||||||||| |||| ||||||||||| |
|
|
| T |
8039298 |
ttcaaagctcattcagcatttttggtatcgacaattacttctgtatattcctttttctctgataaaattatgaatggaaaacctgatgcatatagtctaa |
8039397 |
T |
 |
| Q |
454 |
taacatgtgctgcctttcctatcatgtcgcttagcttgtcgagccaaattcagtgcggatttgaagtcgatcttatgtact |
534 |
Q |
| |
|
| ||||| | ||||||||||||| || |||| |||| ||| ||||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
8039398 |
tttcatgtacatcctttcctatcatttcacttaatttgttgagacaaattcagtgcggattcgaagtgaatctcatgtact |
8039478 |
T |
 |
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Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 150 - 501
Target Start/End: Original strand, 25708394 - 25708745
Alignment:
| Q |
150 |
tggctgttgaaggcaaaagtgtggagatttgttagctttgtttcagctgttattggattgctttgttatgctctaagctcttcgtttaaccatctatttg |
249 |
Q |
| |
|
|||||| || ||| |||||| |||||||||||| | |||| ||||||| || ||||| | | ||||||||||| |||||||| ||||| |||| |||| |
|
|
| T |
25708394 |
tggctgatgcaggaaaaagtatggagatttgttggttttgcttcagctattgttggactagtctgttatgctctcagctcttcatttaattatctgtttg |
25708493 |
T |
 |
| Q |
250 |
gaaattggaatttgttgaaggtaattcttttcactcttttcagtttcatcatcttcctcatgatcttgtatgcacatatatggcaaaactctagaagtct |
349 |
Q |
| |
|
| | ||||| |||| ||| ||||||||| || | || | |||||||| |||| || ||||| |||||| || | |||||||| || ||| |||| |
|
|
| T |
25708494 |
gtgagtggaacttgtcaaagataattctttacagtgttataagtttcataatctgtcttatgattttgtatccaaaggtatggcaatcatccagaggtct |
25708593 |
T |
 |
| Q |
350 |
tcggttcaaagctcatacagcttttcttgtattaacaatcacatctgtgtattcatttttctttgataaagtggtgaatggaaaaccagatgtatatagt |
449 |
Q |
| |
|
||||||||||||||| || ||| |||| || || |||| || || ||||| ||| | | ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
25708594 |
gaagttcaaagctcataccgccttttttgttttgaccctcacctcagtttattcttttatatatgataaagtggtgaatgagaaaccagatgcttatagc |
25708693 |
T |
 |
| Q |
450 |
ctaataacatgtgctgcctttcctatcatgtcgcttagcttgtcgagccaaa |
501 |
Q |
| |
|
|| || |||||||||||||| |||||||||| || || |||||||| |||| |
|
|
| T |
25708694 |
ctcatttcatgtgctgcctttgctatcatgtcactcagtttgtcgagacaaa |
25708745 |
T |
 |
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