View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_30 (Length: 619)
Name: NF1343_low_30
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 78 - 520
Target Start/End: Original strand, 43101855 - 43102300
Alignment:
| Q |
78 |
atatagaaagcaccaaggttcacattcgccgccacacctggcctagctgttcccctaacaacaccgcaacccaccgtctgaggacagttaccaagttcac |
177 |
Q |
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| T |
43101855 |
atatagaaagcaccaaggttcacattcgccgccacacctggcctagctgttcccctaacaacaccgcaacccaccgtctgaggacagttaccaagttcac |
43101954 |
T |
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| Q |
178 |
acaatccaaggattggaagtgccaaagaagtcagccgaagaatattttcatctgcagtaaacattcttccccaacgaaacctcatccctgtggcaaaaat |
277 |
Q |
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| T |
43101955 |
acaatccaaggattggaagtgccaaagaagtcagccgaagaatattttcatctgcagtaaacattctgccccaacgaaacctcatccctgtggcaaaaac |
43102054 |
T |
|
| Q |
278 |
cgtcgctgagaaacctataattacagc-aacgaaaattgcca-ccaggg-atgataacttagcttggaaaggacggttagcacctagctcgtttccaaca |
374 |
Q |
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| T |
43102055 |
cgtgtctgagaaacctataattacagctcacgaaaattgccagccagggcatgataacttagcttggaaaggacggttagcacctagctcgtttccaaca |
43102154 |
T |
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| Q |
375 |
cgggtggaaacggcgaatccaagtgaagatggaaagacataaatgaatgaagtagtttgaattagaatcccgatagaagcaatggttacggtggggtcca |
474 |
Q |
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| T |
43102155 |
cgggtggaaactgcgaatccaagtgaagatggaaagacataaatgaatgaagtagtttgaattagaatcccgatagaagcaatggtaacggtggggtcca |
43102254 |
T |
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| Q |
475 |
caagtaaaccacataaaatgatcattacttcataccaccaccattc |
520 |
Q |
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| T |
43102255 |
caagtaaaccacataaaatgatcattacttcataccaccaccattc |
43102300 |
T |
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