View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_32 (Length: 617)
Name: NF1343_low_32
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 14 - 506
Target Start/End: Original strand, 3084117 - 3084607
Alignment:
| Q |
14 |
agattgcggaggacgagtaggacaattctgaattaagtgttcgggtgacttgcagcatcaacaacagtttgaagcaatgtgaccctttctcatgcagtta |
113 |
Q |
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| T |
3084117 |
agattgcggaggacgagtaggacaattctgaattaagtgtttgggtgacttgcagcatcaacaacagtttgaagcaatatgaccctttctcatgcagtta |
3084216 |
T |
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| Q |
114 |
tgacaatttatagtgggacaatcagagaaagaatgttcaggcttacggtaaagactgctgaacttgagggttttatatgtaactgcaaaggcataattat |
213 |
Q |
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| T |
3084217 |
tgacaatttatagtgggacaatcagagaaagaatgttcaggcttaaggtaaagactgctgaacttg--ggttttatatgtaactgcaaaggcataattat |
3084314 |
T |
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| Q |
214 |
cttgtggacgaagaagtcctaacctagtttcttaagacaaagaaataaagaaattaactacacatatggacaacttaatcctaacataattacaatataa |
313 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3084315 |
cttggggacgaagaagtcctaacctagtttcttaagacaaagaaataaagaaattaactacacatatggaccacttaatcctaacataattacaatataa |
3084414 |
T |
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| Q |
314 |
aatacaataatgagagaatcacattatatcgtaacacgcatgaaggacttcatggtgaacctgacatgaaattcgtagaagtattgaaccagatctaaaa |
413 |
Q |
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| T |
3084415 |
aatacaataatgagagaatcacattatatcgtaacacgtatgaaggacttcatggtgaacctgacatgaaattcgtagaagtattgaaccagatctaaaa |
3084514 |
T |
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| Q |
414 |
ggtatatttaactgttgtgacattctcggtgttttctaatgctcgatatttgatttcttgcaggtcaaaaaagagtacacaaactctgttatt |
506 |
Q |
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| T |
3084515 |
ggtatatttaactgttgtgacattctcggtgttttctgacgctcgatatttgatttcttgcaggtcaaaaaagagtacacaaactctgttatt |
3084607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 14824764 - 14824530
Alignment:
| Q |
17 |
ttgcggaggacgagtaggacaattctgaattaagtgttcgggtgacttgcagcatcaacaacagtttgaagcaatgtgaccctttctcatgcagttatga |
116 |
Q |
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| T |
14824764 |
ttgcggaggacgagtaggacaattctgaattaagtgtccaggtgtcttgcaatatcgacaacagtttgatgcaatatgaccttttttcttgcagttatga |
14824665 |
T |
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| Q |
117 |
caatttatagtgggacaatcagagaaagaatgttcaggcttacggtaaagactgctgaacttgagggttttatatgtaactgcaaaggcataattatctt |
216 |
Q |
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| T |
14824664 |
cattctacattgggacaatcaggaaaagaatgtccagtcatttggcaaactcgacaaaatttgggaattttttttgtaactgcaaaggcaagattatctt |
14824565 |
T |
|
| Q |
217 |
gtggacgaagaagtcctaacctagtttcttaagac |
251 |
Q |
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| T |
14824564 |
gttggcgaagaagtcccaatctagtttcttcagac |
14824530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 2511496 - 2511435
Alignment:
| Q |
288 |
ttaatcctaacataattacaatataaaatacaataatgagagaatcacattatatcgtaaca |
349 |
Q |
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| T |
2511496 |
ttaatcctaacataattacaatataaaatacaataatgagagaatcacaacatatcataaca |
2511435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 2510341 - 2510292
Alignment:
| Q |
300 |
taattacaatataaaatacaataatgagagaatcacattatatcgtaaca |
349 |
Q |
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| T |
2510341 |
taattacaatataaaatacaataatgagagaatcacaacatatcgtaaca |
2510292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 53018302 - 53018395
Alignment:
| Q |
21 |
ggaggacgagtaggacaattctgaattaagtgttcgggtgacttgcagcatcaacaacagtttgaagcaatgtgaccctttctcatgcagttat |
114 |
Q |
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| T |
53018302 |
ggaggacgagtgagacaattttgaatcaagtgaccggctgtcttgcagtatcgacaacaatttgaagtaatatgaccctttttcatgcagttat |
53018395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 336
Target Start/End: Complemental strand, 27684464 - 27684379
Alignment:
| Q |
250 |
acaaagaaataaagaaattaactacacatatggacaacttaatcctaacataattacaatataaaatacaataatgagagaatcaca |
336 |
Q |
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| T |
27684464 |
acaaagaaataaataaaataattacacataaaggatagttaatcctaacatgattataatataaaatacaa-catgagagaatcaca |
27684379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 16501906 - 16501813
Alignment:
| Q |
21 |
ggaggacgagtaggacaattctgaattaagtgttcgggtgacttgcagcatcaacaacagtttgaagcaatgtgaccctttctcatgcagttat |
114 |
Q |
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| T |
16501906 |
ggaggatgagtgggacaattttgaatcaaatgtttggctgtcttgcagtatcgacaacaatttgaagcaatatgaccctttttcaagcaattat |
16501813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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