View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_33 (Length: 615)
Name: NF1343_low_33
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 41 - 576
Target Start/End: Original strand, 28209195 - 28209733
Alignment:
| Q |
41 |
aaccatgccaagacatatttgctgacatgaaatgattatactttgcaaaccaaaatcttggccctgccagctac---tacataacaacaatattgtcaac |
137 |
Q |
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| T |
28209195 |
aaccattccaagacatatttgctgacatgaaatgattatactttgcaaaccaaaatcttggccctgccagctactactacataacaataatattgtcaac |
28209294 |
T |
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| Q |
138 |
tatatagacaaattctaactccctgtcaaaatatacgtcgacctaactaaattatggaccgtgtctcctattcatggtaaatgcagtaacattttttgaa |
237 |
Q |
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| T |
28209295 |
tatatagacaaattctaactccctgtcaaaatatacgtcgacctaactaaattatggaccgtgtctcctattcatggtaaatgcagtaacattttttgaa |
28209394 |
T |
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| Q |
238 |
agaaattttagtgaatataatgtttttacgtactacgttaaaaatattaaatagatttacatgctactcctaataataacaaattattatgcttgcttga |
337 |
Q |
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| T |
28209395 |
agaaattttagtgaatataatatttttacgtactacgttaagaatattaaatagatttacatgctactcctaataataacaaattattatgcttgcttga |
28209494 |
T |
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| Q |
338 |
atttttcaaaacaatgggaatattcttgtaaccgaaatatacttgacaaatatagacaaaaatcattcaagggattgattgtattgaatgtgaaaaccaa |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28209495 |
atttttcaaaacaatgggaatattcttgtaaccgaaatatacttgacaaatatagacaaaaatcattcaagggattgattttattgaatgtgaaaaccaa |
28209594 |
T |
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| Q |
438 |
tctcaagaggacaataaaacaggcaatgaatggcactgcaagggaagatatgatggccgcaggcaacgtttatatcatgactcgtctaatcaaattatga |
537 |
Q |
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| T |
28209595 |
tctcaagaggacaataaaacaggcaatgaatggcactgcaagggaagatatgatggccgcaggcaacgtttatatcatgactcgtctaatcaaattatga |
28209694 |
T |
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| Q |
538 |
agaccattgaaaaaggagtgctaaattagagctaataat |
576 |
Q |
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| T |
28209695 |
agaccactgaaaaaggagtactaaattagagctaataat |
28209733 |
T |
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