View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_38 (Length: 576)
Name: NF1343_low_38
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 29 - 282
Target Start/End: Original strand, 1789344 - 1789587
Alignment:
| Q |
29 |
atttaagtctttaacaacaaagagaatatgatatgatagtttttgtggctgaaatttggttagctaagcaaaatttctaagtgcttgaaagatagaatat |
128 |
Q |
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| T |
1789344 |
atttaagtctttaacaacaaagagaatatgatatgatagtttttgtggctgaaatttggttagctaagcaaaatttctaagtgcttgaaagatagaatat |
1789443 |
T |
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| Q |
129 |
aagaatactatatgaaccataataatgacttaaagctatagagaataaaagtaaaagctagtaaaagataatttttgatgaattcaatgaaactagtttc |
228 |
Q |
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| T |
1789444 |
aagaatactatatgaaccataataatgagttaaagctatagaaaataaa----------agtaaaagatagtttttgatgaattcaatgaaactagtttc |
1789533 |
T |
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| Q |
229 |
ttgtatttgtcacctttagaatttttgcataagaaagataaccattccttttta |
282 |
Q |
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| T |
1789534 |
ttgtatttgtcacctttagaatttttgcataagaaagataaccattccttttta |
1789587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 365 - 479
Target Start/End: Original strand, 1789670 - 1789784
Alignment:
| Q |
365 |
gtacatgaaaatgatttttgttaacatagaagggaatgctttatgaaaatattttacaatttcaaagataagtagtgagaataacatattattctaattg |
464 |
Q |
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| T |
1789670 |
gtacatgaaaatgatttttgttaacatagaaggtaatgctttatgaaaatattttacaatttcaaagataagtagtgagaataacatattattctaattg |
1789769 |
T |
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| Q |
465 |
gaccataaatgtaag |
479 |
Q |
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| T |
1789770 |
gaccataaatgtaag |
1789784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 480 - 553
Target Start/End: Original strand, 1790508 - 1790586
Alignment:
| Q |
480 |
ttgcattggtcggcaacaagactaactattcacaagaatcaaaagggtggtatt-----agttgatttgttcatctcac |
553 |
Q |
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| T |
1790508 |
ttgcattggtcggcaacaagactaactattcacaagaatcattagggtggtattatattagttgatttgttcatgtcac |
1790586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 526
Target Start/End: Original strand, 1784653 - 1784704
Alignment:
| Q |
475 |
gtaagttgcattggtcggcaacaagactaactattcacaagaatcaaaaggg |
526 |
Q |
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| T |
1784653 |
gtaacttgcattggccggcaacaagactaattgtacacaagaatcaaaaggg |
1784704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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