View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_39 (Length: 571)
Name: NF1343_low_39
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 52288550 - 52289081
Alignment:
| Q |
1 |
atatagaactcgatggttaaccttgtaagaaggtaaatatttttaaaacaaaattcatttaacagtgaactacaattatctatgttagcagaagagattg |
100 |
Q |
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| T |
52288550 |
atatagaactcgatggttaaccttgtaagaaggtaaatatttttaaaacaaaattcatttaacagtgaactacaattatctattttagcagaagagattg |
52288649 |
T |
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| Q |
101 |
gaaagaagacaggaatctgtgggcagtaaatagagtatttgtcgagcataata--gacccacgacttatggtgcattttgttaaaagtttgtctataaat |
198 |
Q |
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| T |
52288650 |
gaaagaagacaggaatctgtgggcagtaaatagagtatttgtcgagcataatattgacccacgacttatggtgcattttgttaaaagtttgtctataaat |
52288749 |
T |
|
| Q |
199 |
ttaagagccattttggaatcttacatatgtcttatttacaaattcccatgcaagcaaatttggtttgtgaataagatatatannnnnnnnatagcatgca |
298 |
Q |
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| T |
52288750 |
ttaagagccattttggaatcttatatatgtcttatttacaaattcccatgcaagcaaatttggtttgtgaataagatattt----tttttatagcatgca |
52288845 |
T |
|
| Q |
299 |
attccgcattcattaaagtcgtttggtatagtacctgttggcttggctgcatttgatgatgattaaataataacagtagaactaatcaaattccaaggat |
398 |
Q |
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| T |
52288846 |
attccgcattcattaaagtcgtttggtatagtacctgttggcttggctgcatttgatgatgattaaataataacagtagaactaatcaaattccaaggat |
52288945 |
T |
|
| Q |
399 |
tacacaatttccactttttaccggattcctggttttgtttttgttttaacacac-tttagtatatcttgcacacggttaaggctaggccctgcttaaagt |
497 |
Q |
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| T |
52288946 |
tacacaatttccactttttaccggattcctggttttgtttttgttttaacacacttttagtataacttgcacacggttaaggttaggccctgcttaagct |
52289045 |
T |
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| Q |
498 |
ttttgtgtagacacatataaaacatgggattctttt |
533 |
Q |
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| T |
52289046 |
ttttgtgtagacacatacaaaacatgggattctttt |
52289081 |
T |
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