View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_low_40 (Length: 563)

Name: NF1343_low_40
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_low_40
NF1343_low_40
[»] chr7 (5 HSPs)
chr7 (25-353)||(6414376-6414703)
chr7 (384-447)||(6415607-6415670)
chr7 (289-353)||(19650456-19650520)
chr7 (181-221)||(6448872-6448912)
chr7 (289-333)||(23183182-23183226)
[»] chr4 (3 HSPs)
chr4 (275-378)||(35150390-35150492)
chr4 (298-353)||(8190156-8190211)
chr4 (289-353)||(17743684-17743748)
[»] chr1 (1 HSPs)
chr1 (298-352)||(22669317-22669371)
[»] chr3 (3 HSPs)
chr3 (214-258)||(47597541-47597585)
chr3 (88-143)||(1622349-1622404)
chr3 (220-264)||(10686615-10686659)
[»] scaffold0105 (1 HSPs)
scaffold0105 (298-353)||(16731-16786)
[»] chr2 (1 HSPs)
chr2 (214-258)||(25564015-25564059)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 25 - 353
Target Start/End: Original strand, 6414376 - 6414703
Alignment:
Q  25 caaaataccatttgagatttccaatcattagataaatnnnnnnnn----tgattgtcatcaacgatagagaatggagtattctgagctattaactccaac 120  Q
    |||||||||||||||||||||||||||||||||||||            |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6414376 caaaataccatttgagatttccaatcattagataaataaaaaaaaaaaatgattgtcatcaacaatagagaatggagtattctgagctattaactccaac 6414475  T
Q  121 aatgtctaaagataccaatatgcgatgaaatggaataaacaagataaactatcattctgcaacacaaattcacaatgaaaacgcctattgtaattgtctt 220  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||    
T  6414476 aatgtctgaagataccaatatgcgatgaaatggaataaacaagataaactatcattctgcaacacaaattcacaatgaaaacgcctattg----tgtctt 6414571  T
Q  221 tgaatttctttgtttgtttctatgcgtggttagaagaattcaaacaatacaaagtttgaaagcgacgtttccatcaaaagaagacaaaactggtcagagt 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||| |||    
T  6414572 tgaatttctttgtttgtttctatgcgtggttagaagaattcaaacaatacatagtttgaaagcgacg-ttccatcaaaagaagacaaaattagtcaaagt 6414670  T
Q  321 ctcccagactgctaacgtgtccatcagaacttg 353  Q
    ||||||||||| |||||||||||||||||||||    
T  6414671 ctcccagactgttaacgtgtccatcagaacttg 6414703  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 6415607 - 6415670
Alignment:
Q  384 attgatcacacaagcaagacatggaatcaggacatcatgcaacaagtatttagtaaagacatag 447  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  6415607 attgatcacacaagcaagacatggaatcaggacatcatgcaataagtatttagttaagacatag 6415670  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 19650456 - 19650520
Alignment:
Q  289 ttccatcaaaagaagacaaaactggtcagagtctcccagactgctaacgtgtccatcagaacttg 353  Q
    |||||||| |||||||||||  |||| |||||||||||||||  | | |||||||||||||||||    
T  19650456 ttccatcagaagaagacaaagttggttagagtctcccagactattgatgtgtccatcagaacttg 19650520  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 6448912 - 6448872
Alignment:
Q  181 aacacaaattcacaatgaaaacgcctattgtaattgtcttt 221  Q
    |||||||||||||||  ||||||||||||||||| ||||||    
T  6448912 aacacaaattcacaacaaaaacgcctattgtaatagtcttt 6448872  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 23183182 - 23183226
Alignment:
Q  289 ttccatcaaaagaagacaaaactggtcagagtctcccagactgct 333  Q
    |||||| | |||||||||||||||||||||| | |||||||||||    
T  23183182 ttccataagaagaagacaaaactggtcagagccacccagactgct 23183226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 275 - 378
Target Start/End: Complemental strand, 35150492 - 35150390
Alignment:
Q  275 tttgaaagcgacgtttccatcaaaagaagacaaaactggtcagagtctcccagactgctaacgtgtccatcagaacttgttccgttagaacttgatctca 374  Q
    ||||||||| || |||| |||| ||||||||||||||||| ||||| ||||| |||| | |||||||||||| |||||||| | | | ||||||||||||    
T  35150492 tttgaaagcaacatttc-atcataagaagacaaaactggttagagtttcccaaactgatgacgtgtccatcaaaacttgtttcatcataacttgatctca 35150394  T
Q  375 tcag 378  Q
    ||||    
T  35150393 tcag 35150390  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 8190211 - 8190156
Alignment:
Q  298 aagaagacaaaactggtcagagtctcccagactgctaacgtgtccatcagaacttg 353  Q
    |||||||||||||||| ||  |||| || ||||||| |||||||||||||||||||    
T  8190211 aagaagacaaaactggccaacgtcttccggactgctgacgtgtccatcagaacttg 8190156  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 17743684 - 17743748
Alignment:
Q  289 ttccatcaaaagaagacaaaactggtcagagtctcccagactgctaacgtgtccatcagaacttg 353  Q
    |||||| |||||||||||||| ||||||||||| |||| | |||| | |||||| ||| ||||||    
T  17743684 ttccataaaaagaagacaaaattggtcagagtcacccaaattgctgatgtgtccttcaaaacttg 17743748  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 22669371 - 22669317
Alignment:
Q  298 aagaagacaaaactggtcagagtctcccagactgctaacgtgtccatcagaactt 352  Q
    ||||| |||||||||||||||||| ||||||||| | ||||||||||| ||||||    
T  22669371 aagaacacaaaactggtcagagtcacccagactgttgacgtgtccatccgaactt 22669317  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 47597541 - 47597585
Alignment:
Q  214 ttgtctttgaatttctttgtttgtttctatgcgtggttagaagaa 258  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||    
T  47597541 ttgtctttgaatttctttgtttgtttcaacgcgtggttagtagaa 47597585  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 1622349 - 1622404
Alignment:
Q  88 gagaatggagtattctgagctattaactccaacaatgtctaaagataccaatatgc 143  Q
    |||||||||||||| ||||||| ||| | ||||||| | |||||||||||||||||    
T  1622349 gagaatggagtattgtgagctaataattgcaacaatttataaagataccaatatgc 1622404  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 10686615 - 10686659
Alignment:
Q  220 ttgaatttctttgtttgtttctatgcgtggttagaagaattcaaa 264  Q
    |||||||||||||||||||||||  |||||| |||||||| ||||    
T  10686615 ttgaatttctttgtttgtttctacacgtggtcagaagaatacaaa 10686659  T

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Target: scaffold0105 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 16786 - 16731
Alignment:
Q  298 aagaagacaaaactggtcagagtctcccagactgctaacgtgtccatcagaacttg 353  Q
    |||||||||||||||| ||  |||| || ||||||| |||||||||||||||||||    
T  16786 aagaagacaaaactggccaacgtcttccggactgctgacgtgtccatcagaacttg 16731  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 25564059 - 25564015
Alignment:
Q  214 ttgtctttgaatttctttgtttgtttctatgcgtggttagaagaa 258  Q
    |||| ||||||||||||||||||||||||  |||||| |||||||    
T  25564059 ttgtttttgaatttctttgtttgtttctacacgtggtcagaagaa 25564015  T

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