View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_low_45 (Length: 550)

Name: NF1343_low_45
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_low_45
NF1343_low_45
[»] chr7 (5 HSPs)
chr7 (16-340)||(6414380-6414703)
chr7 (371-434)||(6415607-6415670)
chr7 (276-340)||(19650456-19650520)
chr7 (168-208)||(6448872-6448912)
chr7 (276-320)||(23183182-23183226)
[»] chr4 (3 HSPs)
chr4 (262-365)||(35150390-35150492)
chr4 (285-340)||(8190156-8190211)
chr4 (276-340)||(17743684-17743748)
[»] chr1 (1 HSPs)
chr1 (285-339)||(22669317-22669371)
[»] chr3 (3 HSPs)
chr3 (201-245)||(47597541-47597585)
chr3 (75-130)||(1622349-1622404)
chr3 (207-251)||(10686615-10686659)
[»] scaffold0105 (1 HSPs)
scaffold0105 (285-340)||(16731-16786)
[»] chr2 (1 HSPs)
chr2 (201-245)||(25564015-25564059)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 6414380 - 6414703
Alignment:
Q  16 ataccatttgagatttccaatcattagataaatnnnnnnnn----tgattgtcatcaacgatagagaatggagtattctgagctattaactccaacaatg 111  Q
    |||||||||||||||||||||||||||||||||            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6414380 ataccatttgagatttccaatcattagataaataaaaaaaaaaaatgattgtcatcaacaatagagaatggagtattctgagctattaactccaacaatg 6414479  T
Q  112 tctaaagataccaatatgcgatgaaatggaataaacaagataaactatcattctgcaacacaaattcacaatgaaaacgcctattgtaattgtctttgaa 211  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||    
T  6414480 tctgaagataccaatatgcgatgaaatggaataaacaagataaactatcattctgcaacacaaattcacaatgaaaacgcctattg----tgtctttgaa 6414575  T
Q  212 tttctttgtttgtttctatgcgtggttagaagaattcaaacaatacaaagtttgaaagcgacgtttccatcaaaagaagacaaaactggtcagagtctcc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||| |||||||    
T  6414576 tttctttgtttgtttctatgcgtggttagaagaattcaaacaatacatagtttgaaagcgacg-ttccatcaaaagaagacaaaattagtcaaagtctcc 6414674  T
Q  312 cagactgctaacgtgtccatcagaacttg 340  Q
    ||||||| |||||||||||||||||||||    
T  6414675 cagactgttaacgtgtccatcagaacttg 6414703  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 371 - 434
Target Start/End: Original strand, 6415607 - 6415670
Alignment:
Q  371 attgatcacacaagcaagacatggaatcaggacatcatgcaacaagtatttagtaaagacatag 434  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  6415607 attgatcacacaagcaagacatggaatcaggacatcatgcaataagtatttagttaagacatag 6415670  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 340
Target Start/End: Original strand, 19650456 - 19650520
Alignment:
Q  276 ttccatcaaaagaagacaaaactggtcagagtctcccagactgctaacgtgtccatcagaacttg 340  Q
    |||||||| |||||||||||  |||| |||||||||||||||  | | |||||||||||||||||    
T  19650456 ttccatcagaagaagacaaagttggttagagtctcccagactattgatgtgtccatcagaacttg 19650520  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 6448912 - 6448872
Alignment:
Q  168 aacacaaattcacaatgaaaacgcctattgtaattgtcttt 208  Q
    |||||||||||||||  ||||||||||||||||| ||||||    
T  6448912 aacacaaattcacaacaaaaacgcctattgtaatagtcttt 6448872  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 23183182 - 23183226
Alignment:
Q  276 ttccatcaaaagaagacaaaactggtcagagtctcccagactgct 320  Q
    |||||| | |||||||||||||||||||||| | |||||||||||    
T  23183182 ttccataagaagaagacaaaactggtcagagccacccagactgct 23183226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 262 - 365
Target Start/End: Complemental strand, 35150492 - 35150390
Alignment:
Q  262 tttgaaagcgacgtttccatcaaaagaagacaaaactggtcagagtctcccagactgctaacgtgtccatcagaacttgttccgttagaacttgatctca 361  Q
    ||||||||| || |||| |||| ||||||||||||||||| ||||| ||||| |||| | |||||||||||| |||||||| | | | ||||||||||||    
T  35150492 tttgaaagcaacatttc-atcataagaagacaaaactggttagagtttcccaaactgatgacgtgtccatcaaaacttgtttcatcataacttgatctca 35150394  T
Q  362 tcag 365  Q
    ||||    
T  35150393 tcag 35150390  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 8190211 - 8190156
Alignment:
Q  285 aagaagacaaaactggtcagagtctcccagactgctaacgtgtccatcagaacttg 340  Q
    |||||||||||||||| ||  |||| || ||||||| |||||||||||||||||||    
T  8190211 aagaagacaaaactggccaacgtcttccggactgctgacgtgtccatcagaacttg 8190156  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 340
Target Start/End: Original strand, 17743684 - 17743748
Alignment:
Q  276 ttccatcaaaagaagacaaaactggtcagagtctcccagactgctaacgtgtccatcagaacttg 340  Q
    |||||| |||||||||||||| ||||||||||| |||| | |||| | |||||| ||| ||||||    
T  17743684 ttccataaaaagaagacaaaattggtcagagtcacccaaattgctgatgtgtccttcaaaacttg 17743748  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 22669371 - 22669317
Alignment:
Q  285 aagaagacaaaactggtcagagtctcccagactgctaacgtgtccatcagaactt 339  Q
    ||||| |||||||||||||||||| ||||||||| | ||||||||||| ||||||    
T  22669371 aagaacacaaaactggtcagagtcacccagactgttgacgtgtccatccgaactt 22669317  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 47597541 - 47597585
Alignment:
Q  201 ttgtctttgaatttctttgtttgtttctatgcgtggttagaagaa 245  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||    
T  47597541 ttgtctttgaatttctttgtttgtttcaacgcgtggttagtagaa 47597585  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 1622349 - 1622404
Alignment:
Q  75 gagaatggagtattctgagctattaactccaacaatgtctaaagataccaatatgc 130  Q
    |||||||||||||| ||||||| ||| | ||||||| | |||||||||||||||||    
T  1622349 gagaatggagtattgtgagctaataattgcaacaatttataaagataccaatatgc 1622404  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 10686615 - 10686659
Alignment:
Q  207 ttgaatttctttgtttgtttctatgcgtggttagaagaattcaaa 251  Q
    |||||||||||||||||||||||  |||||| |||||||| ||||    
T  10686615 ttgaatttctttgtttgtttctacacgtggtcagaagaatacaaa 10686659  T

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Target: scaffold0105 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 16786 - 16731
Alignment:
Q  285 aagaagacaaaactggtcagagtctcccagactgctaacgtgtccatcagaacttg 340  Q
    |||||||||||||||| ||  |||| || ||||||| |||||||||||||||||||    
T  16786 aagaagacaaaactggccaacgtcttccggactgctgacgtgtccatcagaacttg 16731  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 25564059 - 25564015
Alignment:
Q  201 ttgtctttgaatttctttgtttgtttctatgcgtggttagaagaa 245  Q
    |||| ||||||||||||||||||||||||  |||||| |||||||    
T  25564059 ttgtttttgaatttctttgtttgtttctacacgtggtcagaagaa 25564015  T

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