View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1343_low_47 (Length: 543)
Name: NF1343_low_47
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_47 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 16 - 543
Target Start/End: Complemental strand, 48415178 - 48414651
Alignment:
| Q |
16 |
gaagagactgaaggaagaaatgagtttgatgagagtgttctttaaaagattgaccaaaactgtggttaatcaccaagaggttcttcagaataaattgttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48415178 |
gaagagactgaaggaagaaatgagtttgatgagagtgttctttaaaagattgaccaaaactgtggttaatcaccaagaggttcttcagaataaattgttg |
48415079 |
T |
|
| Q |
116 |
gaggtgattgatagaatggaaaaagaaaggatgcagagggaagaaaattggaggcgtgaagaaagtgaaatatacgaaagagaagctgtgatgaaagcac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48415078 |
gaggtgattgatagaatggaaaaagaaaggatgcagagggaagaaaattggaggcgggaagaaagtgaaatatacgaaagagaagctgtgatgaaagcac |
48414979 |
T |
|
| Q |
216 |
gtgagcgtgattttgctaaacggagagaatcttccattgtttccagcattgagaaaataacaggtcgaagattttctagtcagtgacagtaatagaatag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48414978 |
gtgagcgtgattttgctaaacggagagaatcttccattgtttccagcattgagaaaataacaggtcgaagattttctagtcagtgacagtaatagaatag |
48414879 |
T |
|
| Q |
316 |
aagattaatgtaaggattatttaaattttattatagatgtagttttagtttgtgttgaaagaaagattgaaatttgccaactacattcatttgcagaaaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48414878 |
aagattaatgtaaggattatttaaattttattatagatgtagttttagtttgtgttgaaagaaagattgaaatttgccaactacattcatttgcagaaaa |
48414779 |
T |
|
| Q |
416 |
tgctgaatgcatgtcacaactgcaaccatcaataatgatgtagttttaatatgattagtttgcatatcctgaactttggttgagatgtaaaagtaagtga |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48414778 |
tgctgaatgcatgtcacaactgcaaccatcaataatgatgtagttttaatatgattagtttgcatatcctgaactttggttgagatgtaaaagtaagtga |
48414679 |
T |
|
| Q |
516 |
atggtcaggatgcctgcatcgaaccaaa |
543 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
48414678 |
atggtcaggatgcctgcattgaaccaaa |
48414651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 389
Target Start/End: Complemental strand, 48403722 - 48403658
Alignment:
| Q |
324 |
tgtaaggattatttaaattttattatagatgtagttttagtttgtgttgaaagaaagattgaaatt |
389 |
Q |
| |
|
|||||| ||||||| ||||||||| || ||| | ||| |||||||||||||| ||||||||||||| |
|
|
| T |
48403722 |
tgtaagtattatttcaattttatt-taaatgcaatttgagtttgtgttgaaaaaaagattgaaatt |
48403658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University