View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_48 (Length: 543)
Name: NF1343_low_48
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_48 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 9 - 543
Target Start/End: Complemental strand, 48415185 - 48414651
Alignment:
| Q |
9 |
agcaaaggaagagactgaaggaagaaatgagtttgatgagagtgttctttaaaagattgaccaaaactgtggttaatcaccaagaggttcttcagaataa |
108 |
Q |
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| T |
48415185 |
agcaaaagaagagactgaaggaagaaatgagtttgatgagagtgttctttaaaagattgaccaaaactgtggttaatcaccaagaggttcttcagaataa |
48415086 |
T |
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| Q |
109 |
attgttggaggtgattgatagaatggaaaaagaaaggatgcagagggaagaaaattggaggcgtgaagaaagtgaaatatacgaaagagaagctgtgatg |
208 |
Q |
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| T |
48415085 |
attgttggaggtgattgatagaatggaaaaagaaaggatgcagagggaagaaaattggaggcgggaagaaagtgaaatatacgaaagagaagctgtgatg |
48414986 |
T |
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| Q |
209 |
aaagcacgtgagcgtgattttgctaaacggagagaatcttccattgtttccagcattgagaaaataacaggtcgaagattttctagtcagtgacagtaat |
308 |
Q |
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| T |
48414985 |
aaagcacgtgagcgtgattttgctaaacggagagaatcttccattgtttccagcattgagaaaataacaggtcgaagattttctagtcagtgacagtaat |
48414886 |
T |
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| Q |
309 |
agaatagaagattaatgtaaggattatttaaattttattatagatgtagttttagtttgtgttgaaagaaagattgaaatttgccaactacattcatttg |
408 |
Q |
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| T |
48414885 |
agaatagaagattaatgtaaggattatttaaattttattatagatgtagttttagtttgtgttgaaagaaagattgaaatttgccaactacattcatttg |
48414786 |
T |
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| Q |
409 |
cagaaaatgctgaatgcatgtcacaactgcaaccatcaataatgatgtagttttaatatgattagtttgcatatcctgaactttggttgagatgtaaaag |
508 |
Q |
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| T |
48414785 |
cagaaaatgctgaatgcatgtcacaactgcaaccatcaataatgatgtagttttaatatgattagtttgcatatcctgaactttggttgagatgtaaaag |
48414686 |
T |
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| Q |
509 |
taagtgaatggtcaggatgcctgcatcgaaccaaa |
543 |
Q |
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| T |
48414685 |
taagtgaatggtcaggatgcctgcattgaaccaaa |
48414651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 389
Target Start/End: Complemental strand, 48403722 - 48403658
Alignment:
| Q |
324 |
tgtaaggattatttaaattttattatagatgtagttttagtttgtgttgaaagaaagattgaaatt |
389 |
Q |
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| T |
48403722 |
tgtaagtattatttcaattttatt-taaatgcaatttgagtttgtgttgaaaaaaagattgaaatt |
48403658 |
T |
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