View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1343_low_49 (Length: 530)
Name: NF1343_low_49
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_49 |
 | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 29 - 521
Target Start/End: Complemental strand, 17831834 - 17831342
Alignment:
| Q |
29 |
agtacctaacactgatgtaacacgttccattccattcttacctcaaccaactaaattgaatcatcaccgaaatgaagaagaaggtgaaagtgaaaagatg |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17831834 |
agtacctaacactgatgtaacacgttccattccattcttaccttaaccaactaaattgaatcatcaccgaaatgatgaagaaggtgaaagtgaaaagatg |
17831735 |
T |
|
| Q |
129 |
aacaattttgggaatacctgaacattcaatacctccgatttttgaaaatctgagtcatcttaagcgttggagagggagataaactgagaatagtgaagaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17831734 |
aacaattttgggaatacctgaacattcaatacctccgattttttaaaatctgagtcatcttaagcgttggagagggagataaactgagaataatgaagaa |
17831635 |
T |
|
| Q |
229 |
tgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaattcatagaaagggtaaaactattacctt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17831634 |
tgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaattcatagaaagggtaaaactattacctt |
17831535 |
T |
|
| Q |
329 |
gagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatggatgtttaagatttagcaacagaagaagcattgttgat |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
17831534 |
gagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatggatgtttaagatttagcaacagaagaagcatcgtcgat |
17831435 |
T |
|
| Q |
429 |
gaagggagagagaaacgatgaaagatttcggttcatattacgatgtcatctttctctttctctggagaagttgaattgtgatggtttctgtgg |
521 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17831434 |
gaagggagagagaaacgacgaaagatttcggttcatattacgatgacatctttctctttctctggagaagttgaattgtgatggtttctgtgg |
17831342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 29 - 521
Target Start/End: Complemental strand, 7135868 - 7135397
Alignment:
| Q |
29 |
agtacctaacactgatgtaacacgttccattccattcttacctcaaccaactaaattgaatcatcaccgaaatgaagaagaaggtgaaagtgaaaagatg |
128 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7135868 |
agtacctaacaccgatgtaacacgttccattccattcttacctcaaccaactaaatcgaatcgtcaccgaaatggagaagaaggtgaaagtgaaaagatg |
7135769 |
T |
|
| Q |
129 |
aacaattttgggaatacctgaacattcaatacctccgatttttgaaaatctgagtcatcttaagcgttggagagggagataaactgagaatagtgaagaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
7135768 |
aacaattttgggaatacctgaacattcaatacatccgatttttgaaaatcttagtcatctcaagcgttggagagggagaaaaaatgagaatagtgaagaa |
7135669 |
T |
|
| Q |
229 |
tgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaattcatagaaagggtaaaactattacctt |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7135668 |
tgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaa---------------------aaaactattacctt |
7135590 |
T |
|
| Q |
329 |
gagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatggatgtttaagatttagcaacagaagaagcattgttgat |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7135589 |
gagagaaaattcacaaaatcaacaaatctgaacaacgatggaatagagcattaagtatgatggatgtttgagatttagcaacagaagaagcattgttgat |
7135490 |
T |
|
| Q |
429 |
gaagggagagagaaacgatgaaagatttcggttcatattacgatgtcatctttctctttctctggagaagttgaattgtgatggtttctgtgg |
521 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7135489 |
gaagggagagagaaacgacggaagatttcggttcatattacgatgacatctttctctttctctggagaagttgaattgtgatggtttctgtgg |
7135397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 46 - 171
Target Start/End: Original strand, 52525261 - 52525386
Alignment:
| Q |
46 |
taacacgttccattccattcttacctcaaccaactaaattgaatcatcaccgaaatgaagaagaaggtgaaagtgaaaagatgaacaattttgggaatac |
145 |
Q |
| |
|
||||||||||||||||||||||||||||| | || |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
52525261 |
taacacgttccattccattcttacctcaatcgacgaaattgaatcgtcatcgaaatggagaagaaggtgaaagtgaaaagatgaacaattttgggaatgc |
52525360 |
T |
|
| Q |
146 |
ctgaacattcaatacctccgattttt |
171 |
Q |
| |
|
|||||||||||| |||||| |||||| |
|
|
| T |
52525361 |
ctgaacattcaacacctccaattttt |
52525386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 219 - 346
Target Start/End: Original strand, 52525386 - 52525515
Alignment:
| Q |
219 |
tagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaatt--catagaaagggtaa |
316 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
52525386 |
tagtaaagaatgattgactccataaaggttctaggggatgaaagtgaaactgagaactgaaattcagagaaacgaaattcaatttctatagaaagggtaa |
52525485 |
T |
|
| Q |
317 |
aactattaccttgagagaaaattcacaaaa |
346 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
52525486 |
aacgattaccttgagagaaaattcacaaaa |
52525515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 288 - 448
Target Start/End: Original strand, 22292156 - 22292316
Alignment:
| Q |
288 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatg |
387 |
Q |
| |
|
||||| |||||||| ||||||||||| ||| | |||||||||||||||| ||| |||||| | |||||||||||| | ||||| | |||||||||| |
|
|
| T |
22292156 |
aaacacaattcaatacatagaaagggaaaagcgattaccttgagagaaacttcgcaaaattagcaaatctgaacagtggtggaagggagcattaagcata |
22292255 |
T |
|
| Q |
388 |
atggatgtttaagatttagcaacagaagaagcattgttgatgaagggagagagaaacgatg |
448 |
Q |
| |
|
|||||||| | ||||| |||||| | |||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
22292256 |
atggatgtcttagattcagcaacgggagaagctttgttgatgaacggagagagcaacgatg |
22292316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 369
Target Start/End: Complemental strand, 5658415 - 5658334
Alignment:
| Q |
288 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
369 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | ||||||||||||||||||| |
|
|
| T |
5658415 |
aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacaacgatgg |
5658334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 14677485 - 14677558
Alignment:
| Q |
289 |
aacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaaca |
362 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | |||||||||||| |
|
|
| T |
14677485 |
aacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaaca |
14677558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 369
Target Start/End: Original strand, 31100334 - 31100415
Alignment:
| Q |
288 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
369 |
Q |
| |
|
||||| ||||||||||||||||| | ||| |||||||||||||||||| || |||||| | |||||||||||| |||||| |
|
|
| T |
31100334 |
aaacacaattcaattcatagaaaagaaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacagcgatgg |
31100415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 368
Target Start/End: Original strand, 11096 - 11176
Alignment:
| Q |
288 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatg |
368 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | ||||| |||||||||||| |
|
|
| T |
11096 |
aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatttgaacaacgatg |
11176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 362
Target Start/End: Complemental strand, 10093117 - 10093043
Alignment:
| Q |
288 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaaca |
362 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||||||||||||| || |||||| | |||||||||||| |
|
|
| T |
10093117 |
aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaaca |
10093043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 369
Target Start/End: Original strand, 33044908 - 33044989
Alignment:
| Q |
288 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
369 |
Q |
| |
|
||||| ||||||||||||||||| || ||| |||||||||||||||||| || |||||| | |||||||||||| |||||| |
|
|
| T |
33044908 |
aaacacaattcaattcatagaaaaggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacagcgatgg |
33044989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 369
Target Start/End: Complemental strand, 35719 - 35639
Alignment:
| Q |
289 |
aacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg |
369 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||||||||||| ||| || |||||| | |||||||||||| |||||| |
|
|
| T |
35719 |
aacacaattcaattcatagaaagggaaaagctattaccttgagataaactttgcaaaattagcaaatctgaacagcgatgg |
35639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 373
Target Start/End: Original strand, 37362214 - 37362273
Alignment:
| Q |
314 |
taaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaata |
373 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||| ||||||| ||||||| ||||||||| |
|
|
| T |
37362214 |
taaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaata |
37362273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 17682425 - 17682380
Alignment:
| Q |
288 |
aaacaaaattcaattcatagaaagggtaaaactattaccttgagag |
333 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
17682425 |
aaacacaattcaattcatagaaagggaaaaacgattaccttgagag |
17682380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University