View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_52 (Length: 523)
Name: NF1343_low_52
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_52 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 13 - 433
Target Start/End: Original strand, 31650266 - 31650686
Alignment:
| Q |
13 |
aatatggtgagtatgtaattatgaagagttgaaggaagaccattttaataataaaaaatatttattttaattggatagtgcatgtctttctaatgaaatg |
112 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31650266 |
aatatggtcagtatgtaattatgaagagttgaaggaagaccattttaataataaaaaatatttatttcaattggatagtgcatgtctttctaatgaaatg |
31650365 |
T |
|
| Q |
113 |
aaaatacacgactatgaggaaataaacaagtttaataggtctcattctttcctattcaaattaattcagttttcagattttaattcatttattcatcttc |
212 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31650366 |
aaaatacacgactttgaggaaataaacaagtttaataggtctcattctttcctattcaaattaattcagttttcagattttaattcattcattcatcttc |
31650465 |
T |
|
| Q |
213 |
aaaaattgttatggtgaaattcaagcactctaacgtgggacttcgaaaaccgtcgctaataatatgttggacattgttcctcacattgtttgtgactttc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31650466 |
aaaaattgttatggtgaaattcaagcactctagcgtgggacttcgaaaaccgtcgctaataatatgttggacattgttcctcacattgtttgtgactttc |
31650565 |
T |
|
| Q |
313 |
acattcctcattcttatcatcttaactcttcgtattcctaaaccaaatcaccttaactccatcactcatagtaacactctcaggtttctcttccattcaa |
412 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31650566 |
acattcctcattcttattatcttaactcttcgtattcctaaaccaaatcaccttaactccatcactcatagtaacactctcaggtttctcttccattcaa |
31650665 |
T |
|
| Q |
413 |
ctacaaacacatcttcctttt |
433 |
Q |
| |
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||||||||||||||||||||| |
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| T |
31650666 |
ctacaaacacatcttcctttt |
31650686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 24 - 433
Target Start/End: Original strand, 31653732 - 31654169
Alignment:
| Q |
24 |
tatgtaattatgaagagttgaaggaagaccattttaataataaaaaatatttattttaattggatagtgcatgtctttctaatgaaatgaaaatacacga |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| | ||||||||||||| |||||||||||| | ||| |
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|
| T |
31653732 |
tatgtaattatgaagagttgaaggaagaccattttaataataaaaaa-attaatttcaattggacaatgcatgtctttctgatgaaatgaaaagaaacgc |
31653830 |
T |
|
| Q |
124 |
ctatgaggaaa------------------taaacaagtttaataggtctcattct----------ttcctattcaaattaattcagttttcagattttaa |
195 |
Q |
| |
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|| |||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||| ||||||||| |
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| T |
31653831 |
ctttgaggaaagtgtatagcacgctgaaataaacaagtttaataggtcacattctcattttttttttccaattcaaattaattcagtttttagattttaa |
31653930 |
T |
|
| Q |
196 |
ttcatttattcatcttcaaaaattgtta-tggtgaaattcaagcactctaacgtgggacttcgaaaaccgtcgctaataatatgttggacattgttcctc |
294 |
Q |
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|||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||||||||||||||| |
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| T |
31653931 |
ttcattcattcatctttaaaaactgttaatggtgaaattcaagcactctaacgtaggacttcgaaaaccatcgctaataacatgctggacattgttcctc |
31654030 |
T |
|
| Q |
295 |
acattgtttgtgactttcacattcctcattcttatcatcttaactcttcgtattcctaaaccaaatcaccttaactccatcactcatagtaacactctca |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
31654031 |
acattgtttgtgactttcacattcctcattcttattatcttaactcttcgtatccctaaactaaatcaccttaactccatcactcatagtaacactctca |
31654130 |
T |
|
| Q |
395 |
ggtttctcttccattcaactacaaacacatcttcctttt |
433 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||| |
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|
| T |
31654131 |
ggtttctctttgattcaactacaaacttatcttcctttt |
31654169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 433
Target Start/End: Original strand, 31635434 - 31635544
Alignment:
| Q |
323 |
ttcttatcatcttaactcttcgtattcctaaaccaaatcaccttaactccatcactcatagtaacactctcaggtttctcttccattcaactacaaacac |
422 |
Q |
| |
|
||||||| ||||| |||| ||||| |||||||| || ||||| |||||||||||||||| ||||| |||||||||| ||||| ||||||||||||||| |
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| T |
31635434 |
ttcttattctcttatctctccgtatccctaaacccaaacacctcaactccatcactcatattaacaatctcaggtttttcttcaattcaactacaaacat |
31635533 |
T |
|
| Q |
423 |
atcttcctttt |
433 |
Q |
| |
|
||||| ||||| |
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|
| T |
31635534 |
atctttctttt |
31635544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 323 - 429
Target Start/End: Original strand, 31643411 - 31643517
Alignment:
| Q |
323 |
ttcttatcatcttaactcttcgtattcctaaaccaaatcaccttaactccatcactcatagtaacactctcaggtttctcttccattcaactacaaacac |
422 |
Q |
| |
|
||||||| ||||| |||| ||||| |||||||| || ||||| |||||||||||||||| |||||||||||||||| ||||| ||||||| ||||| | |
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| T |
31643411 |
ttcttattctcttatctctccgtatccctaaacccaaacacctcaactccatcactcatattaacactctcaggtttttcttcaattcaacaacaaagtc |
31643510 |
T |
|
| Q |
423 |
atcttcc |
429 |
Q |
| |
|
||||||| |
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|
| T |
31643511 |
atcttcc |
31643517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 347
Target Start/End: Original strand, 31628810 - 31628967
Alignment:
| Q |
190 |
ttttaattcatttattcatcttcaaaaattgttatggtgaaattcaagcactctaacgtgggacttcgaaaaccgtcgctaataatatgttggacattgt |
289 |
Q |
| |
|
|||||||||||| ||||||||||||||| | ||||||||||||||| |||||| | |||| |||||||||||| ||| | | | ||||||| |
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| T |
31628810 |
ttttaattcattcattcatcttcaaaaactattatggtgaaattcagacactctcgtcttggaccacgaaaaccgtcgttaacagcgtctcagacattga |
31628909 |
T |
|
| Q |
290 |
tcctcacattgtttgtgactttcacattcctcattcttatcatcttaactcttcgtat |
347 |
Q |
| |
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|| |||||||||||||||| |||||||| |||||||| || |||||||||| ||||| |
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|
| T |
31628910 |
tcttcacattgtttgtgaccttcacattgctcattctcattctcttaactctccgtat |
31628967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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