View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_54 (Length: 521)
Name: NF1343_low_54
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 33 - 482
Target Start/End: Original strand, 12935943 - 12936398
Alignment:
| Q |
33 |
tggcacatggacaattaatttagggtcaaaagattactcacctaacaatcttgcaatctcattggtgcttaagtaatcctcatcccaattcgatcatctg |
132 |
Q |
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| T |
12935943 |
tggcacatggacaattaatttagggtcaaaagattactcacctaacaatcttgcaatctcattggtgcttaagtaatcctcatcccaattcgatcatctg |
12936042 |
T |
|
| Q |
133 |
tttgccatcaagttcttagttttcgaatcatacaatttgtaagaatgtctttgatggcattcaagagcaatatcaactagatacatcttgctttctcatt |
232 |
Q |
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| T |
12936043 |
tttgccatcaagttcttagttttcgaatcatacaatttgtaagaatgtctttgatgtcattcaagagcaatatcaactagatgcatcttgctttctcatt |
12936142 |
T |
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| Q |
233 |
catatttcaaactattacttccttttactatgcat------catcttcattttaagatccttagacattgtgatctaattggggcgtcaatatttttaat |
326 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12936143 |
catatttcaaactattacttccttgtactatgcatcttatccatcttcattttaagatccttagacattgtgatctaattggggcgtcaatatttataat |
12936242 |
T |
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| Q |
327 |
attttaccataattactttgatatgtgaacatcctattacaagtcttcatcaatttgacaaagcatttgaatgttgatgaagtacttgagtatggtttct |
426 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12936243 |
attttaccacaattactttgatatgtgaacatcctattacaagtcttcatcaatttgacaaagcatttgaatgttgatgaagtacttgggtatggtttct |
12936342 |
T |
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| Q |
427 |
tgatcactcattacttattttctggttcttgttttcaccaataaccaccacatgac |
482 |
Q |
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| T |
12936343 |
tgatcactcattacttactttctggttcttgttttcaccaataaccatcacatgac |
12936398 |
T |
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