View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_55 (Length: 516)
Name: NF1343_low_55
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 6 - 487
Target Start/End: Original strand, 36650580 - 36651061
Alignment:
| Q |
6 |
ctccaacaatatcaaacgcagccagatgctcaacaacattaaacatgctcatcaacatcatctgtccgagctgaagatcagcaaccaaggatttgctact |
105 |
Q |
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| T |
36650580 |
ctccaagaataccaaacgcagccagatgctcaacaacattaaacacgctcatcaacatcatctgtccaagctgaagatcagcaaccaaggatttgctact |
36650679 |
T |
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| Q |
106 |
agcatggtaaccgcaatgcttaccaacaattcttggtgtggagggtaaatttaacaagccctccataccaagggtgatcgagtaactcggtgtaaaatcc |
205 |
Q |
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| T |
36650680 |
agcatggtaaccgcaatgcttaccaacaattcttggtgtggagggtaaatttaacaagccctccataccaagggtgatcgagtaactcggtgtaaaatcc |
36650779 |
T |
|
| Q |
206 |
ataatgaatctattttctccagtgagctcgttcatctcacataaaaaataaggcacgcccctcattgcagccacaacctcggccaaatcatcaacagcac |
305 |
Q |
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| T |
36650780 |
ataatgaaactattttctccagtgagctcgttcatctcacgcaaaaaataaggcacacccctcattgcagccacaaccttggccaaatcatcaacagcac |
36650879 |
T |
|
| Q |
306 |
ccattttgatggctatattaattatgttattccataacctttccgggttgccatacatgggctgcgagccaaccaaactgggattttcttcgttggtact |
405 |
Q |
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| T |
36650880 |
ccattttgatggctatattaattatgttattccataacctttccgggttgccatacatgggctgcgagccgaccaaactggcattttcttcgttggtact |
36650979 |
T |
|
| Q |
406 |
aaagacaacaagatcatccttagccaatatcagactattataaatgttggcttcgccaaaacgcttttttggatactcatca |
487 |
Q |
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| T |
36650980 |
aaagacaacaagatcatccttagccaatatcaaactattataaatgttggcttcgccaaaacgcttttttggatactcatca |
36651061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 278 - 484
Target Start/End: Complemental strand, 36642579 - 36642376
Alignment:
| Q |
278 |
acaacctcggccaaatcatcaacagcacccattttgatggctatattaattatgttattccataacctttccgggttgccatacatgggctgcgagccaa |
377 |
Q |
| |
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|||||||||| |||||| |||| || ||||||||||||||||||||| |||||||||||||| |||||||| ||| | |||||||| ||||| |||| | |
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| T |
36642579 |
acaacctcggtcaaatcttcaataggacccattttgatggctatattgattatgttattccacaacctttcggggcttccatacataggctgtaagccca |
36642480 |
T |
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| Q |
378 |
ccaaactgggattttcttcgttggtactaaagacaacaagatcatccttagccaatatcagactattataaatgttggcttcgccaaaacgcttttttgg |
477 |
Q |
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| T |
36642479 |
caaga---tcattctctttatcggtaataaaaatgacaagatcatccttagccaataccagattgttataaacgttggctttgccaaaatgctgttttgg |
36642383 |
T |
|
| Q |
478 |
atactca |
484 |
Q |
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||||||| |
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| T |
36642382 |
atactca |
36642376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 36642969 - 36642879
Alignment:
| Q |
27 |
ccagatgctcaacaacattaaacatgctcatcaacatcatctgtccgagctgaagatcagcaaccaaggatttgctactagcatggtaacc |
117 |
Q |
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|||||| ||| || |||||||||| ||||||||||||||||||| ||||||||||||| | ||||||| |||||||| |||||| |||||| |
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| T |
36642969 |
ccagattctcgacgacattaaacacgctcatcaacatcatctgtacgagctgaagatcggaaaccaagcatttgctagtagcatagtaacc |
36642879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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