View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_low_57 (Length: 504)

Name: NF1343_low_57
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_low_57
NF1343_low_57
[»] chr3 (20 HSPs)
chr3 (348-475)||(26403400-26403527)
chr3 (200-317)||(26403558-26403679)
chr3 (107-201)||(43207447-43207542)
chr3 (110-199)||(53507094-53507183)
chr3 (110-200)||(44708281-44708372)
chr3 (110-199)||(50939445-50939534)
chr3 (107-199)||(48156942-48157036)
chr3 (107-200)||(9878894-9878986)
chr3 (110-199)||(34290849-34290940)
chr3 (110-182)||(54407368-54407439)
chr3 (134-200)||(48720530-48720596)
chr3 (133-190)||(47467591-47467648)
chr3 (133-184)||(50258733-50258784)
chr3 (135-185)||(36605861-36605911)
chr3 (135-184)||(27078819-27078868)
chr3 (135-184)||(27084616-27084665)
chr3 (135-184)||(36716276-36716325)
chr3 (135-184)||(38681348-38681397)
chr3 (135-184)||(54619454-54619503)
chr3 (148-184)||(3954866-3954902)
[»] chr6 (13 HSPs)
chr6 (107-201)||(20711925-20712020)
chr6 (107-184)||(27788895-27788972)
chr6 (110-201)||(17353757-17353848)
chr6 (110-201)||(235435-235527)
chr6 (110-184)||(19986982-19987056)
chr6 (110-200)||(28075587-28075678)
chr6 (133-187)||(30832666-30832720)
chr6 (134-184)||(23070889-23070939)
chr6 (135-184)||(11081684-11081733)
chr6 (135-184)||(13727650-13727699)
chr6 (123-184)||(19741212-19741273)
chr6 (148-184)||(21280349-21280385)
chr6 (148-184)||(27314778-27314814)
[»] chr8 (10 HSPs)
chr8 (110-201)||(42600582-42600674)
chr8 (107-184)||(23798468-23798545)
chr8 (110-184)||(23606831-23606905)
chr8 (110-184)||(10917210-10917283)
chr8 (133-184)||(20003875-20003926)
chr8 (109-184)||(45472207-45472281)
chr8 (135-184)||(2952473-2952522)
chr8 (135-184)||(3048774-3048823)
chr8 (135-184)||(5860996-5861045)
chr8 (135-183)||(30883127-30883175)
[»] chr1 (15 HSPs)
chr1 (110-199)||(40502000-40502090)
chr1 (106-200)||(9173228-9173322)
chr1 (110-199)||(13913693-13913782)
chr1 (110-187)||(19955544-19955620)
chr1 (110-199)||(17168769-17168857)
chr1 (110-184)||(27559463-27559538)
chr1 (110-200)||(44895466-44895557)
chr1 (107-184)||(1367084-1367161)
chr1 (110-202)||(51607648-51607742)
chr1 (109-184)||(23181727-23181801)
chr1 (133-184)||(14146221-14146272)
chr1 (151-184)||(5027991-5028024)
chr1 (135-184)||(27906949-27906998)
chr1 (135-184)||(44655555-44655604)
chr1 (148-184)||(41697293-41697329)
[»] chr7 (13 HSPs)
chr7 (107-199)||(47985176-47985268)
chr7 (107-200)||(19691896-19691990)
chr7 (106-200)||(38415081-38415175)
chr7 (110-184)||(24525894-24525968)
chr7 (110-184)||(48984054-48984127)
chr7 (110-199)||(20091491-20091579)
chr7 (110-198)||(25010254-25010342)
chr7 (110-200)||(10329619-10329710)
chr7 (110-184)||(23551281-23551355)
chr7 (134-184)||(28749597-28749647)
chr7 (151-202)||(10027615-10027667)
chr7 (148-184)||(12596443-12596479)
chr7 (135-190)||(18777019-18777075)
[»] chr2 (12 HSPs)
chr2 (107-199)||(26715931-26716023)
chr2 (110-199)||(27506951-27507041)
chr2 (107-184)||(9045848-9045924)
chr2 (110-201)||(24410234-24410325)
chr2 (110-179)||(8327488-8327556)
chr2 (114-199)||(10762779-10762865)
chr2 (135-184)||(4505695-4505744)
chr2 (133-184)||(3952915-3952966)
chr2 (135-184)||(3155019-3155068)
chr2 (153-190)||(5952949-5952986)
chr2 (135-184)||(6964808-6964857)
chr2 (152-203)||(52968-53020)
[»] chr4 (24 HSPs)
chr4 (110-184)||(24969258-24969332)
chr4 (110-196)||(40089328-40089413)
chr4 (107-184)||(16844843-16844921)
chr4 (107-184)||(32128408-32128485)
chr4 (110-196)||(54083454-54083541)
chr4 (107-203)||(2790947-2791044)
chr4 (134-199)||(38352489-38352554)
chr4 (107-182)||(16882601-16882675)
chr4 (110-184)||(37777434-37777509)
chr4 (110-199)||(19498313-19498402)
chr4 (117-181)||(34027407-34027471)
chr4 (125-183)||(35463958-35464016)
chr4 (151-199)||(54779441-54779490)
chr4 (135-187)||(38209842-38209894)
chr4 (133-184)||(1105447-1105498)
chr4 (113-184)||(10431421-10431492)
chr4 (109-184)||(35780532-35780606)
chr4 (148-190)||(9579483-9579525)
chr4 (148-190)||(9585178-9585220)
chr4 (134-184)||(45560704-45560754)
chr4 (135-184)||(55255096-55255145)
chr4 (148-184)||(5128997-5129033)
chr4 (124-184)||(17679233-17679293)
chr4 (124-184)||(47127997-47128057)
[»] chr5 (14 HSPs)
chr5 (113-184)||(16199005-16199076)
chr5 (110-199)||(27923885-27923974)
chr5 (107-200)||(38869567-38869660)
chr5 (110-199)||(7670728-7670816)
chr5 (110-181)||(9364113-9364183)
chr5 (110-199)||(40389743-40389831)
chr5 (107-184)||(16799530-16799606)
chr5 (133-184)||(15480228-15480279)
chr5 (133-184)||(19523109-19523160)
chr5 (135-184)||(34756615-34756664)
chr5 (148-184)||(22987481-22987517)
chr5 (116-184)||(30853282-30853350)
chr5 (148-184)||(31881604-31881640)
chr5 (135-199)||(34855925-34855989)
[»] scaffold0027 (1 HSPs)
scaffold0027 (110-201)||(4147-4238)
[»] scaffold0039 (1 HSPs)
scaffold0039 (125-199)||(106379-106454)
[»] scaffold0070 (1 HSPs)
scaffold0070 (148-184)||(1027-1063)


Alignment Details
Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 348 - 475
Target Start/End: Complemental strand, 26403527 - 26403400
Alignment:
Q  348 ttttatttccaccacacttagccctatggattaaaaattgtgattctctatgcttttttacttgccaacatactgttatattgctcacaactataagtaa 447  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  26403527 ttttatttccacctcacttagccctatggattaaaaattgtgattctctatgctttttaacttgccaacatactgttatgttgctcacaactataagtaa 26403428  T
Q  448 cataagtatacagtttgagcatcttagg 475  Q
    ||||||||||||||||||||||||||||    
T  26403427 cataagtatacagtttgagcatcttagg 26403400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 26403679 - 26403558
Alignment:
Q  200 atcaggtacatagttgataaagctaataacttgaaacccgaacgactagataa----atttattttaatctttgaattaaaagtttattaaatttatgat 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| ||    
T  26403679 atcaggtacatagttgataaagctaataacttgaaacccgaacgactagataattaaatttattttaatctttgaattaaaagtttattaaatttattat 26403580  T
Q  296 actagttttttcaggttttact 317  Q
    ||||||||||||||||||||||    
T  26403579 actagttttttcaggttttact 26403558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 43207447 - 43207542
Alignment:
Q  107 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgat 201  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  43207447 taatactagtgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggaccgggcctgat 43207542  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 53507094 - 53507183
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 199  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  53507094 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 53507183  T

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Target: chr3; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 44708372 - 44708281
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 200  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||    
T  44708372 tactagtggatattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagagccgggcctga 44708281  T

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Target: chr3; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 50939445 - 50939534
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc-cctcagggtcgggcctg 199  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  50939445 tactggtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggacgggcctg 50939534  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 48157036 - 48156942
Alignment:
Q  107 taatactagtgggtattaaaaac-aaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 199  Q
    ||||||||||||||||||||||  ||| || |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  48157036 taatactagtgggtattaaaaaataaaatttaggcccatgattgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 48156942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 9878894 - 9878986
Alignment:
Q  107 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 200  Q
    |||||||||||||||||||||| ||  ||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||| ||| |||||    
T  9878894 taatactagtgggtattaaaaaaaa--ttgaggcccatgattaagggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 9878986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 34290849 - 34290940
Alignment:
Q  110 tactagtgggtattaaaaacaaac-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 199  Q
    ||||||||| ||||||||| |||  |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  34290849 tactagtggatattaaaaaaaaaaattgaggcccatgcctgagggaggcccaactctgttgagctgtttgcaccccctcagggtcgggcctg 34290940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 54407368 - 54407439
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc 182  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54407368 tactagtaggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccaactctgttgagctgtttgcacc 54407439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 48720530 - 48720596
Alignment:
Q  134 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggcctga 200  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| || ||||||    
T  48720530 ttgaggcccatgactgagggaagctcagctctgttgagctgtttgcacccgtcagggccgtgcctga 48720596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 47467648 - 47467591
Alignment:
Q  133 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcaggg 190  Q
    ||||||||||||   |||||||||| ||||||  ||||||||||||||||||||||||    
T  47467648 cttgaggcccatccttgagggaggctcagctcgtttgagctgtttgcacccctcaggg 47467591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 50258733 - 50258784
Alignment:
Q  133 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  50258733 cttgaggcccatccttgagggaggcccagctcatttgagctgtttgcacccc 50258784  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 36605911 - 36605861
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccct 185  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||    
T  36605911 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccct 36605861  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 27078819 - 27078868
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  27078819 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 27078868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 27084616 - 27084665
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  27084616 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 27084665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 36716276 - 36716325
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  36716276 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 36716325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 38681348 - 38681397
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  38681348 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 38681397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 54619454 - 54619503
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  54619454 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 54619503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 3954866 - 3954902
Alignment:
Q  148 tgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||||||||  ||||||||||||||||||    
T  3954866 tgagggaggcccagctcgtttgagctgtttgcacccc 3954902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 20711925 - 20712020
Alignment:
Q  107 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc-cctcagggtcgggcctgat 201  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  20711925 taatactagtgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggccgggcctgat 20712020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 27788895 - 27788972
Alignment:
Q  107 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27788895 taatactagtgggtattaaaaaaaaatttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 27788972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 17353848 - 17353757
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgat 201  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  17353848 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctgat 17353757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 235435 - 235527
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgat 201  Q
    ||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  235435 tactagtgggtattaaaaaaaaaattaaggtccatgactgagggaggcccagctctgttaagctgtttgcaccccctcagggacgggcctgat 235527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 19987056 - 19986982
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  19987056 tactagtgggtattaaaaaaaaatttgaggcccataattgagggaggcccagctctgttgagctgtttgcacccc 19986982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 28075678 - 28075587
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 200  Q
    ||||||||||||||||||| ||| |||| |||||||||||| ||| ||| ||||||||||||||||||||| |||||||| | |||||||||    
T  28075678 tactagtgggtattaaaaaaaaaattgaagcccatgactgaaggaagcctagctctgttgagctgtttgcaccccctcagagccgggcctga 28075587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 30832666 - 30832720
Alignment:
Q  133 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctca 187  Q
    ||||||||||||   |||||||||||||||||  |||||||||||||||||||||    
T  30832666 cttgaggcccatccttgagggaggcccagctcatttgagctgtttgcacccctca 30832720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 23070889 - 23070939
Alignment:
Q  134 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  23070889 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 23070939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 11081684 - 11081733
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||| || ||||||||| |||||  ||||||||||||||||||    
T  11081684 tgaggcccatgccttagggaggcctagctccattgagctgtttgcacccc 11081733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 13727650 - 13727699
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  13727650 tgaggcccatctttgagggaggcccagctcgtttgagctgtttgcacccc 13727699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 19741212 - 19741273
Alignment:
Q  123 taaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||| ||| |||||| ||||   |||||||||||||||||  ||||||||||||||||||    
T  19741212 taaaaaaaaaattgaggtccatccttgagggaggcccagctcgtttgagctgtttgcacccc 19741273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 21280385 - 21280349
Alignment:
Q  148 tgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||||||||  ||||||||||||||||||    
T  21280385 tgagggaggcccagctcgtttgagctgtttgcacccc 21280349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 27314778 - 27314814
Alignment:
Q  148 tgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||||||||  ||||||||||||||||||    
T  27314778 tgagggaggcccagctcgtttgagctgtttgcacccc 27314814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 42600674 - 42600582
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgat 201  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  42600674 tactagtgggtattaaaaataaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctgat 42600582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 23798468 - 23798545
Alignment:
Q  107 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  23798468 taatactagtgggtattaaaaaaaaatttgaggcccatgactgagggaggcccagctttgttgagctgttcgcacccc 23798545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 23606831 - 23606905
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23606831 tactagtgggtattaaaagaaaatttgaggcccatgactgagggaggcccaactctgttgagctgtttgcacccc 23606905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 10917283 - 10917210
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  10917283 tactagtgggtattaaaaaaaaa-ttgtggcccatgagtgagggaggcccagctctgttgagctgtttgcacccc 10917210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 20003875 - 20003926
Alignment:
Q  133 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  20003875 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 20003926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 45472281 - 45472207
Alignment:
Q  109 atactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||| ||||||| ||||| ||| |||||||||||   || ||| |||||||||| |||||||||||||||||||    
T  45472281 atactaatgggtataaaaaaaaaa-ttgaggcccatccttgggggtggcccagctcggttgagctgtttgcacccc 45472207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 2952473 - 2952522
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  2952473 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 2952522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 3048774 - 3048823
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  3048774 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 3048823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 5860996 - 5861045
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  5860996 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 5861045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 30883175 - 30883127
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccc 183  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||    
T  30883175 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccc 30883127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 40502000 - 40502090
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 199  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  40502000 tactagtgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 40502090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 9173228 - 9173322
Alignment:
Q  106 ataatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 200  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||    
T  9173228 ataatactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccaactctgttgagctgtttgcaccccctcagggccgggcctga 9173322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 13913693 - 13913782
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 199  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  13913693 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 13913782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 19955620 - 19955544
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctca 187  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19955620 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcacccctca 19955544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 17168857 - 17168769
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 199  Q
    ||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||    
T  17168857 tactagtgggtattaaaaaaaa--ttgaggcccatgactgagggaggccaagctctattgagctgtttgcatcccctcagggtcgggcctg 17168769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 27559538 - 27559463
Alignment:
Q  110 tactagtgggtattaaaaacaaac-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||||||||| |||  ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27559538 tactagtgggtattaaaaaaaaaaattgaggcccatgactgagggaggtccagctctgttgagctgtttgcacccc 27559463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 44895557 - 44895466
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 200  Q
    ||||||||| ||||||||| |||  || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||    
T  44895557 tactagtggatattaaaaaaaaaaatgtggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgagcctga 44895466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 1367084 - 1367161
Alignment:
Q  107 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1367084 taatactagtgggtattaaaattttttttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 1367161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 51607648 - 51607742
Alignment:
Q  110 tactagtgggtattaaaaacaaact-tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc-cctcagggtcgggcctgatc 202  Q
    ||||||||| ||||||||| |||   |||||||||||| ||||| |||||||||||| |||||||||||||||| ||||| |  |||||||||||    
T  51607648 tactagtggatattaaaaaaaaaaaatgaggcccatgattgaggaaggcccagctctattgagctgtttgcaccacctcatgaccgggcctgatc 51607742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 23181801 - 23181727
Alignment:
Q  109 atactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||| ||||||| ||||| ||| ||||||||||| | || ||| |||||||||| |||||||||||||||||||    
T  23181801 atactaatgggtataaaaaa-aaatttgaggcccatcattgggggtggcccagctcggttgagctgtttgcacccc 23181727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 14146272 - 14146221
Alignment:
Q  133 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  14146272 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 14146221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 5027991 - 5028024
Alignment:
Q  151 gggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||||| |||||||||||||||||||    
T  5027991 gggaggcccagctcggttgagctgtttgcacccc 5028024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 27906949 - 27906998
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  27906949 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 27906998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 44655604 - 44655555
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  44655604 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 44655555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 41697293 - 41697329
Alignment:
Q  148 tgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||||||||  ||||||||||||||||||    
T  41697293 tgagggaggcccagctcgtttgagctgtttgcacccc 41697329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 47985176 - 47985268
Alignment:
Q  107 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 199  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  47985176 taatactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 47985268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 19691990 - 19691896
Alignment:
Q  107 taatactagtgggtattaaaaacaaacttgaggcccat-gactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 200  Q
    |||||||||| ||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19691990 taatactagttggtattaaaaaaaaa-ttgaggcccattgactgagggaggcccagctctgttgagctgtttgcaccccctcagggtcgggcctga 19691896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 38415081 - 38415175
Alignment:
Q  106 ataatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 200  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||    
T  38415081 ataatactagtgggtattaaaaa-aaatttgaggcccatgactaagggaggcccagctctgttgagctgtttgcatcccctcagagccgggcctga 38415175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 24525894 - 24525968
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24525894 tactagtgggtattaaaaaaaaaattgaggcccatgactaagggaggcccagctctgttgagctgtttgcacccc 24525968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 48984054 - 48984127
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48984054 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 48984127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 20091491 - 20091579
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggcctg 199  Q
    |||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  20091491 tactggtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctattgagctgtttgcaccccccagggacgggcctg 20091579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 25010342 - 25010254
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcct 198  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||    
T  25010342 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccaactctgttgagctgtttgtaccccctcagggccgggcct 25010254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 10329619 - 10329710
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 200  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||| || ||| ||||||| ||||||||| |||||||||  |||||||||    
T  10329619 tactagtgggtattaaaaaaaaaattgaggcccatgactgagggagacctagcgctgttgaactgtttgcaccccctcaggaccgggcctga 10329710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 23551281 - 23551355
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||||||||| ||| ||||||||||||| ||||||||| ||| |||| ||||||||||||||||||    
T  23551281 tactagtgggtattaaaaaaaaaattgaggcccatgattgagggaggtccaactctattgagctgtttgcacccc 23551355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 28749647 - 28749597
Alignment:
Q  134 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  28749647 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 28749597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 10027667 - 10027615
Alignment:
Q  151 gggaggcccagctctgttgagctgtttgcacc-cctcagggtcgggcctgatc 202  Q
    ||||||||||||||||| |||||||||||||| || ||||| ||| |||||||    
T  10027667 gggaggcccagctctgtagagctgtttgcacctccccagggccggccctgatc 10027615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 12596443 - 12596479
Alignment:
Q  148 tgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||||||||  ||||||||||||||||||    
T  12596443 tgagggaggcccagctcgtttgagctgtttgcacccc 12596479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 18777019 - 18777075
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc-cctcaggg 190  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||| ||||||||    
T  18777019 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacctcctcaggg 18777075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 26716023 - 26715931
Alignment:
Q  107 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 199  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  26716023 taatactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 26715931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 27506951 - 27507041
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 199  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  27506951 tactaatgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 27507041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 9045924 - 9045848
Alignment:
Q  107 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9045924 taatactaatgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 9045848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 24410325 - 24410234
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgat 201  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  24410325 tactaatgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccccttagggacgggcctgat 24410234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 8327556 - 8327488
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgc 179  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8327556 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgc 8327488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 10762779 - 10762865
Alignment:
Q  114 agtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 199  Q
    ||||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| ||| ||||    
T  10762779 agtgggtattaaaaaaaaaattgaggcccatgattgagggaagcccagctctgttgagctgtttgcatcccctcagggccggccctg 10762865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 4505744 - 4505695
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||| | |||||||||||||||||  ||||||||||||||||||    
T  4505744 tgaggcccatcattgagggaggcccagctcgtttgagctgtttgcacccc 4505695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 3952966 - 3952915
Alignment:
Q  133 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  3952966 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 3952915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 3155068 - 3155019
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  3155068 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 3155019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 5952949 - 5952986
Alignment:
Q  153 gaggcccagctctgttgagctgtttgcacccctcaggg 190  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  5952949 gaggcccagctcgtttgagctgtttgcacccctcaggg 5952986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 6964857 - 6964808
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  6964857 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 6964808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 52968 - 53020
Alignment:
Q  152 ggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgatca 203  Q
    ||||||||||||| || |||||| ||||| |||||||||||||| ||||||||    
T  52968 ggaggcccagctcagtagagctgcttgcaccccctcagggtcggccctgatca 53020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 24969332 - 24969258
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24969332 tactagtgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 24969258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 40089413 - 40089328
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggc 196  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  40089413 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcatggccgggc 40089328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 16844921 - 16844843
Alignment:
Q  107 taatactagtgggtatt-aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16844921 taatactagtgggtatttaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 16844843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 32128485 - 32128408
Alignment:
Q  107 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||||||||||||| ||| |||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  32128485 taatactagtgggtattaaaaaaaaaattgaggtccataactgagggaggcccagctctgttgagctgtttgcacccc 32128408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 54083454 - 54083541
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggc 196  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||| |||||    
T  54083454 tactagtgggtattaaaaaaaaaattgaggcccatgactgagggatgcccagctctattgagctgtttgcaccccctcagggacgggc 54083541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 2790947 - 2791044
Alignment:
Q  107 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctgatca 203  Q
    |||||||||||||| || |||| ||| |||| | ||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  2790947 taatactagtgggttttcaaaaaaaaattgacgtccatgactgagggagacccagctctgttgagctgtttgcaccccctcagagtcgggcctgatca 2791044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 38352489 - 38352554
Alignment:
Q  134 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggcctg 199  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38352489 ttgaggcccatgactaagggaggcccagctctgttgagctgtttgcacccctcagggccgggcctg 38352554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 16882601 - 16882675
Alignment:
Q  107 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacc 182  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  16882601 taatactagtgggtattaaaaaaaaa-ttgaggctcatgactaagggaagcccagctctgttgagctgtttgcacc 16882675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 37777434 - 37777509
Alignment:
Q  110 tactagtgggtattaaaaacaaac-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||||||||| |||  ||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  37777434 tactagtgggtattaaaaaaaaaaattgaggcccatgattgagggaggtccagctctgttgagctgtttgcacccc 37777509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 19498402 - 19498313
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc-tcagggtcgggcctg 199  Q
    ||||||||||||||||||| ||| ||||||||||||| || |||||||||||| |||||||||| |||||||||| |||||| ||||||||    
T  19498402 tactagtgggtattaaaaaaaaa-ttgaggcccatgattgggggaggcccagcactgttgagctatttgcaccccgtcagggccgggcctg 19498313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 34027471 - 34027407
Alignment:
Q  117 gggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcac 181  Q
    |||||||||||| ||| |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  34027471 gggtattaaaaaaaaaattgaggcccatgactgagggagacccagctctgttgagcagtttgcac 34027407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 35464016 - 35463958
Alignment:
Q  125 aaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccc 183  Q
    |||| ||| |||| ||||||| ||| |||||||||||||||||||||||||||||||||    
T  35464016 aaaaaaaaattgatgcccatggctgggggaggcccagctctgttgagctgtttgcaccc 35463958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 54779490 - 54779441
Alignment:
Q  151 gggaggcccagctctgttgagctgtttgcac-ccctcagggtcgggcctg 199  Q
    |||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  54779490 gggaggcccagctcggttgagctgtttgcactccctcagggccgggcctg 54779441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 38209842 - 38209894
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctca 187  Q
    ||||||||||   |||||||||||||||||  |||||||||||||||||||||    
T  38209842 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccctca 38209894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 1105498 - 1105447
Alignment:
Q  133 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  1105498 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 1105447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 10431421 - 10431492
Alignment:
Q  113 tagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||| ||||| |   |||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  10431421 tagtgggtataaaaaatatttttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 10431492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 35780532 - 35780606
Alignment:
Q  109 atactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||| ||| ||||||||| ||| |||||||| ||   || |||||||||||||| |||||||||||||||||||    
T  35780532 atactactggatattaaaaaaaaa-ttgaggcctatccgtgggggaggcccagctcggttgagctgtttgcacccc 35780606  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 9579483 - 9579525
Alignment:
Q  148 tgagggaggcccagctctgttgagctgtttgcacccctcaggg 190  Q
    |||||||||||||||||  ||||||||||||||| ||||||||    
T  9579483 tgagggaggcccagctcgtttgagctgtttgcacgcctcaggg 9579525  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 9585178 - 9585220
Alignment:
Q  148 tgagggaggcccagctctgttgagctgtttgcacccctcaggg 190  Q
    |||||||||||||||||  ||||||||||||||| ||||||||    
T  9585178 tgagggaggcccagctcgtttgagctgtttgcacgcctcaggg 9585220  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 45560704 - 45560754
Alignment:
Q  134 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  45560704 ttgaggcccatctttgagggaggcccagctcgtttgagctgtttgcacccc 45560754  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 55255145 - 55255096
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  55255145 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 55255096  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 5128997 - 5129033
Alignment:
Q  148 tgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||||||||  ||||||||||||||||||    
T  5128997 tgagggaggcccagctcgtttgagctgtttgcacccc 5129033  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 17679293 - 17679233
Alignment:
Q  124 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||| ||| |||||||||||   |||||||||| ||||||  ||||||||||||||||||    
T  17679293 aaaaataaaattgaggcccatccttgagggaggctcagctcgtttgagctgtttgcacccc 17679233  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 47128057 - 47127997
Alignment:
Q  124 aaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||| ||| |||||||||||   |||||||||||||||||  ||| ||||||||||||||    
T  47128057 aaaaaaaaaattgaggcccatccttgagggaggcccagctcgtttgggctgtttgcacccc 47127997  T

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Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 16199005 - 16199076
Alignment:
Q  113 tagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16199005 tagtgggtattaaaaaaaaaattgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 16199076  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 27923974 - 27923885
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctg 199  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||    
T  27923974 tactagtgggtattaaaaaaaaa-ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcaccccctcagggacgggcctg 27923885  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 38869567 - 38869660
Alignment:
Q  107 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcagggtcgggcctga 200  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| || |||||||||    
T  38869567 taatactagtgggtattaaaaa-aaatttgaggcccatgactgagggaggcccagctttgttgagctgtttgcaccccctcatggccgggcctga 38869660  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 7670816 - 7670728
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggcctg 199  Q
    ||||||||||| ||||||| ||| || || ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  7670816 tactagtgggtgttaaaaaaaaa-ttaagacccatgactgagggaggcccaactctgttgagctgtttgcacccctcagggccgggcctg 7670728  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 9364183 - 9364113
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcac 181  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9364183 tactagtggatattaaaaaaaaa-ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcac 9364113  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 40389743 - 40389831
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccc-ctcagggtcgggcctg 199  Q
    ||||||||||||||||||| ||  |||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||    
T  40389743 tactagtgggtattaaaaaaaa--ttgaggtccatgactgagggaggcccaggtctgttgagctgtttgcacccgctcagggccgggcctg 40389831  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 16799530 - 16799606
Alignment:
Q  107 taatactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||| ||||| ||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  16799530 taatactaatgggtgttaaaaaaaaa-ttgaggcccatgactgagggaggcctagctctattgagctgtttgcacccc 16799606  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 15480228 - 15480279
Alignment:
Q  133 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  15480228 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 15480279  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 19523160 - 19523109
Alignment:
Q  133 cttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  19523160 cttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 19523109  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 34756615 - 34756664
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  34756615 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 34756664  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 22987481 - 22987517
Alignment:
Q  148 tgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||||||||  ||||||||||||||||||    
T  22987481 tgagggaggcccagctcgtttgagctgtttgcacccc 22987517  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 30853350 - 30853282
Alignment:
Q  116 tgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    ||||||| ||||| ||| |||||| ||||   ||| |||||||||||||  ||||||||||||||||||    
T  30853350 tgggtataaaaaaaaaaattgaggtccatccttgaaggaggcccagctcgtttgagctgtttgcacccc 30853282  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 31881604 - 31881640
Alignment:
Q  148 tgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||||||||  ||||||||||||||||||    
T  31881604 tgagggaggcccagctcgtttgagctgtttgcacccc 31881640  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 34855989 - 34855925
Alignment:
Q  135 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccctcagggtcgggcctg 199  Q
    ||||||||||  || |||||||||||||||  || ||||||||||| |||| |||| ||||||||    
T  34855989 tgaggcccataccttagggaggcccagctccatttagctgtttgcatccctaagggccgggcctg 34855925  T

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Target: scaffold0027 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 4238 - 4147
Alignment:
Q  110 tactagtgggtattaaaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccc-ctcagggtcgggcctgat 201  Q
    ||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  4238 tactagtgggtattaaaaaaaaa-ttgaggcccatgactggaggaggcccagctctgttgagctgtttgcaccctctcagggccggccctgat 4147  T

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Target: scaffold0039 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 125 - 199
Target Start/End: Complemental strand, 106454 - 106379
Alignment:
Q  125 aaaacaaacttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccc-ctcagggtcgggcctg 199  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  106454 aaaaaaaatttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccctctcagggccgggcctg 106379  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 1063 - 1027
Alignment:
Q  148 tgagggaggcccagctctgttgagctgtttgcacccc 184  Q
    |||||||||||||||||  ||||||||||||||||||    
T  1063 tgagggaggcccagctcgtttgagctgtttgcacccc 1027  T

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