View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_58 (Length: 494)
Name: NF1343_low_58
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 100 - 476
Target Start/End: Complemental strand, 8894029 - 8893653
Alignment:
| Q |
100 |
caattcacaatcttcataaggaatccaaacaagcgagtatccatttactttgacaggctttccacctttgtgtcatatagaaaccatccgattacacctc |
199 |
Q |
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| T |
8894029 |
caattcacaatcttcataaggaatccaaacaagcgagtatccatttactttgacaggctttccacctttgtgtcatatagaaaccatccgattacacctc |
8893930 |
T |
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| Q |
200 |
atcatatgcttccgtcgctttacttggagaagcatgaaaccgtgtcggtatcaccagttttaggaggcgtgccggttccagtttcggtggatgttttgaa |
299 |
Q |
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| T |
8893929 |
atcatatgcttccgtcgctttacttggagaagcatgaaaccgtgtcggtatcaccagttttaggaggcgtgccggttccagtttcggtggatgttttgaa |
8893830 |
T |
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| Q |
300 |
tggtttggtgttggatgagaattatggggtggtgggtgtgaaacttatatttcaaggcaggttgaggtggaaaactggtgagataaaatctgcacattat |
399 |
Q |
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| T |
8893829 |
tggtttggtgttggatgagaattatggggtggtgggtgtgaaacttatatttcaaggcaggttgaggtggaaaactggtgagataaaatctgcacattat |
8893730 |
T |
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| Q |
400 |
aatatgtatgccaagtgtgatttattgttgggtttgaagaaaggtcttgttggtcagattcctcttattggtgctcc |
476 |
Q |
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| T |
8893729 |
aatatgtatgccaagtgtgatttattgttgggtttgaagaaaggtcttgttggtcagattcctcttattggtgctcc |
8893653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 464
Target Start/End: Original strand, 49087788 - 49087975
Alignment:
| Q |
277 |
ccagtttcggtggatgttttgaatggtttggtgttggatgagaattatggggtggtgggtgtgaaacttatatttcaaggcaggttgaggtggaaaactg |
376 |
Q |
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| T |
49087788 |
ccagtgtcggtggaagtgtcgaatgggttgatgatggatgaggcttatggagtggtgggtttgaaacttgtgtttcttggaaggttaaggtggaaagcag |
49087887 |
T |
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| Q |
377 |
gtgagataaaatctgcacattataatatgtatgccaagtgtgatttattgttgggtttgaagaaaggtcttgttggtcagattcctct |
464 |
Q |
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| T |
49087888 |
ggacaataagaagtgcacattatgggttctatggaaagtgtgatgtattgatcggtttgaagaaaggtgttgttggacaggttcctct |
49087975 |
T |
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