View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1343_low_59 (Length: 494)
Name: NF1343_low_59
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_59 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 127 - 412
Target Start/End: Original strand, 16868025 - 16868310
Alignment:
| Q |
127 |
gttgcaacttggaaagaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactcatgctcatcctttatcacggtta |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| | | |||||||||| ||| |||| |
|
|
| T |
16868025 |
gttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaactaaggttcatcctttagcacagtta |
16868124 |
T |
|
| Q |
227 |
tctaatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaa |
326 |
Q |
| |
|
||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868125 |
tctgatgatgacatctgatcgttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaa |
16868224 |
T |
|
| Q |
327 |
aatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggacttctgtggtg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16868225 |
aatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggacttctgtggtg |
16868310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 136 - 412
Target Start/End: Complemental strand, 17069636 - 17069357
Alignment:
| Q |
136 |
tggaaagaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactcatg---ctcatcctttatcacggttatctaat |
232 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
17069636 |
tggaaagaaaggtgcatcaattttagtcactaccagacttgacattgttgcatccatcatgggaactcatgatgctcatcctttatcacggttatctgat |
17069537 |
T |
|
| Q |
233 |
gatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtg |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17069536 |
gatgacatctggtctttgttcaaacaacatgcttttggagcaaagagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtg |
17069437 |
T |
|
| Q |
333 |
tgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggacttctgtggtg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17069436 |
tgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtg |
17069357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 127 - 412
Target Start/End: Complemental strand, 16658148 - 16657863
Alignment:
| Q |
127 |
gttgcaacttggaaagaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactcatgctcatcctttatcacggtta |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| | | |||||||||| ||| |||| |
|
|
| T |
16658148 |
gttgcaacttggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaactaaggttcatcctttagcacagtta |
16658049 |
T |
|
| Q |
227 |
tctaatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaa |
326 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16658048 |
tctgatgatgacatctggtcgttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagatcttgtggaaataggccaaaagttagtgagaa |
16657949 |
T |
|
| Q |
327 |
aatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggacttctgtggtg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16657948 |
aatgtgtgggttcacctcttgctgctaaagtattgggaagccttttacgctttaaaagcgatgaacatcaatggatttctgtggtg |
16657863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 136 - 412
Target Start/End: Complemental strand, 16837807 - 16837531
Alignment:
| Q |
136 |
tggaaagaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactcatgctcatcctttatcacggttatctaatgat |
235 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| | | |||||||||| ||| ||||||| ||||| |
|
|
| T |
16837807 |
tggaaagaaaggtgcatcaattttggtcactaccagacttgagattgttgcatccatcatgggaactaaggttcatcctttagcacagttatctgatgat |
16837708 |
T |
|
| Q |
236 |
gacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgg |
335 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16837707 |
gacatctggtcgttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgg |
16837608 |
T |
|
| Q |
336 |
gttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggacttctgtggtg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16837607 |
gttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtg |
16837531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 136 - 408
Target Start/End: Complemental strand, 16797296 - 16797024
Alignment:
| Q |
136 |
tggaaagaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactcatgctcatcctttatcacggttatctaatgat |
235 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||| ||||| |
|
|
| T |
16797296 |
tggaaagaaaggtgcatcaattttggtcactaccagacttgacattgttgcatccatcatgggaacttatgttcatcatttaacacggttatctgatgat |
16797197 |
T |
|
| Q |
236 |
gacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgg |
335 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||| |
|
|
| T |
16797196 |
gacatctggtctttgttcaaacaacaagcttttggagcaaatagagaagagcgtgcagagcttgtggcaataggcaagaagttagtgagaaaatgtgtgg |
16797097 |
T |
|
| Q |
336 |
gttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggacttctgt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||| |||||| |
|
|
| T |
16797096 |
gttcacctcttgctgctaaagtattgggaagcagtttgcgctttacaagcgacgaacatcaatggatttctgt |
16797024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 142 - 408
Target Start/End: Complemental strand, 16788091 - 16787822
Alignment:
| Q |
142 |
gaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaact---catgctcatcctttatcacggttatctaatgatgac |
238 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| |||||||||| |||| |||| |||||| || |||| |
|
|
| T |
16788091 |
gaaaggtgcatcaattttggtcactgcacgacttgacattgttgcatccatcatggcaacttatcatgctcatcgtttaacacgcttatctgattctgac |
16787992 |
T |
|
| Q |
239 |
atctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggtt |
338 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
16787991 |
atctggtctttgttcaaacaacaagctttcagagaaaatagagaagaacgtgcagagcttgtggaaataggcaagaagttagtgagaaaatgtgtgggtt |
16787892 |
T |
|
| Q |
339 |
cacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggacttctgt |
408 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||| |||| |||||| ||||||||||||| |||||| |
|
|
| T |
16787891 |
caactcttgctgctaaagtattgggaagcagtttgcgatttacaagcgacgaacatcaatggatttctgt |
16787822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 142 - 400
Target Start/End: Original strand, 18806233 - 18806494
Alignment:
| Q |
142 |
gaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactcat---gctcatcctttatcacggttatctaatgatgac |
238 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||||||||||| |||||||||||| || ||||||| ||| | | | |||||| |||||| |
|
|
| T |
18806233 |
gaaaggtgcatcaattttggtcacaaccagacttgacattgttgcatcaatcatgggaacttatcctgctcatcatttgttaggcttatctgatgatgca |
18806332 |
T |
|
| Q |
239 |
atctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggtt |
338 |
Q |
| |
|
||||||| |||||| |||||| | ||||||| | |||||||||||| ||| ||||||||||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
18806333 |
atctggtatttgtttaaacaaaaagcttttgaaacaaatagagaagagcgagcagagcttgtggcaataggcaaggagttagtgagaaaatgtgtgggtt |
18806432 |
T |
|
| Q |
339 |
cacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatgg |
400 |
Q |
| |
|
|||||||||| || |||||| | |||||||||||||||||||||| || |||||||||||| |
|
|
| T |
18806433 |
cacctcttgccgcaaaagtactaggaagccttttgcgctttaaaactgaggaacatcaatgg |
18806494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 142 - 400
Target Start/End: Original strand, 18873227 - 18873488
Alignment:
| Q |
142 |
gaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactcat---gctcatcctttatcacggttatctaatgatgac |
238 |
Q |
| |
|
||||||||||||| ||||||| || || ||||||||||||||||||| |||||||||||| || ||||||| ||| | | | |||||| |||||| | |
|
|
| T |
18873227 |
gaaaggtgcatcagttttggtcacaaccagacttgacattgttgcatcaatcatgggaacttatcctgctcatcatttgttaggcttatctgatgatgcc |
18873326 |
T |
|
| Q |
239 |
atctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggtt |
338 |
Q |
| |
|
||||||| |||||| |||||| | ||||||| | |||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
18873327 |
atctggtatttgtttaaacaaaaagcttttgaaacaaatagagaagagcgtgcagagcttgtggcaataggcaaggagttagtgagaaaatgtgtgggtt |
18873426 |
T |
|
| Q |
339 |
cacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatgg |
400 |
Q |
| |
|
| |||||||| || |||||| | |||||||||||||||||||||| || |||||||||||| |
|
|
| T |
18873427 |
ctcctcttgccgcaaaagtactaggaagccttttgcgctttaaaactgaggaacatcaatgg |
18873488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 142 - 367
Target Start/End: Complemental strand, 16987578 - 16987350
Alignment:
| Q |
142 |
gaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactcat---gctcatcctttatcacggttatctaatgatgac |
238 |
Q |
| |
|
||||||||||||| ||||||| || || ||||||||| |||||||||||||||||||||| || ||||||||||| | |||||| ||||| || |
|
|
| T |
16987578 |
gaaaggtgcatcagttttggtcaccaccagacttgacaatgttgcatccatcatgggaacttatcctgctcatcctttggtcggcttatctgatgatcac |
16987479 |
T |
|
| Q |
239 |
atctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggtt |
338 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| |||| |||||| |||||||||||||||||||||||| | ||||| |||||||||| |||||||| |
|
|
| T |
16987478 |
atctggtctttgttcaaacaacaagctttcggagaaaatggagaagagcgtgcagagcttgtggaaataggtaagaagttggtgagaaaatttgtgggtt |
16987379 |
T |
|
| Q |
339 |
cacctcttgctgctaaagtattgggaagc |
367 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
16987378 |
cacctcttgctgctaaagtattgggaagc |
16987350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 142 - 400
Target Start/End: Complemental strand, 16781223 - 16780962
Alignment:
| Q |
142 |
gaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactca---tgctcatcctttatcacggttatctaatgatgac |
238 |
Q |
| |
|
||||||| |||| ||||| || || ||||||||||| |||||||||||||||||||||||||| |||||| | ||| | | |||| | | || ||| |
|
|
| T |
16781223 |
gaaaggttcatctattttagtcacaacacgacttgatattgttgcatccatcatgggaactcaccctgctcaccatttggtaggtttatatgacgacgac |
16781124 |
T |
|
| Q |
239 |
atctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggtt |
338 |
Q |
| |
|
|| ||| | || || |||||||| ||||||||| | ||| | |||| || ||||||||||| | ||||||| | || |||||| |||||||||||||| |
|
|
| T |
16781123 |
atttggacattatttaaacaacacgcttttggacctaatggggaagagcctgcagagcttgcagcaataggcaaggagatagtgataaaatgtgtgggtt |
16781024 |
T |
|
| Q |
339 |
cacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatgg |
400 |
Q |
| |
|
|||| |||||||| || || ||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
16781023 |
caccacttgctgccaaggttttgggaagccttttgcgctttaaaaatgaggaacatcaatgg |
16780962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 238 - 383
Target Start/End: Complemental strand, 16843828 - 16843683
Alignment:
| Q |
238 |
catctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggt |
337 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| | ||||||| |||||||| ||||| |||||| | || |||| ||||||||||||||| |
|
|
| T |
16843828 |
catctggtctttgttcaagcaacacgcttttggagctgaaagagaagaacgtgcagaccttgtaacaataggtaaggagatagttagaaaatgtgtgggt |
16843729 |
T |
|
| Q |
338 |
tcacctcttgctgctaaagtattgggaagccttttgcgctttaaaa |
383 |
Q |
| |
|
|| ||||||||||| |||||| | ||||||||| |||| ||||||| |
|
|
| T |
16843728 |
tcgcctcttgctgccaaagtactaggaagccttctgcggtttaaaa |
16843683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 127 - 412
Target Start/End: Complemental strand, 37626 - 37341
Alignment:
| Q |
127 |
gttgcaacttggaaagaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactcatgctcatcctttatcacggtta |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||| ||||| | |||||||||||||||||||||||| | | |||||||||| ||| |||| |
|
|
| T |
37626 |
gttgcaacttggaaagaaaggtgcatcaatattggtcactaccagacttcagattgttgcatccatcatgggaactaaggttcatcctttagcacagtta |
37527 |
T |
|
| Q |
227 |
tctaatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaa |
326 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37526 |
tctgatgatgacatctggtcgttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaa |
37427 |
T |
|
| Q |
327 |
aatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggacttctgtggtg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37426 |
aatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggatttctgtggtg |
37341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 127 - 408
Target Start/End: Complemental strand, 12988 - 12704
Alignment:
| Q |
127 |
gttgcaacttggaaagaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactc---atgctcatcctttatcacgg |
223 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |||| || | |
|
|
| T |
12988 |
gttgcaacatggaaagaaaggtgcatcaattttggtcactaccagacttgacattgttgcatccatcatgggaacttctgatgctcatcatttagcaagc |
12889 |
T |
|
| Q |
224 |
ttatctaatgatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtga |
323 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
12888 |
ttatctgatgatgacatctggtctttgttcaaacaacaagcttttgtagcaaatagagaagagcgtgcagagcttgtggcaataggcaaaaagttagtga |
12789 |
T |
|
| Q |
324 |
gaaaatgtgtgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggacttctgt |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| ||| || ||||||||||||| |||||| |
|
|
| T |
12788 |
gaaaatgtgtgggttcacctcttgctgctaaagtattaggaagcagtttgtgctttacaagtgacgaacatcaatggatttctgt |
12704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 136 - 408
Target Start/End: Complemental strand, 8637 - 8362
Alignment:
| Q |
136 |
tggaaagaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactc---atgctcatcctttatcacggttatctaat |
232 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||| |||| || | |||||| || |
|
|
| T |
8637 |
tggaaagaaaggtgcatcaattttgatcactaccagacttgacattgttgcatccatcatgggaacttctgatgctcatcatttagcaagcttatctgat |
8538 |
T |
|
| Q |
233 |
gatgacatctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtg |
332 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||| |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
8537 |
gatgacatctggtctttgttcaaacaacaagcttttggagaaaatcgagaagagcgtgcagagcttgtggcaataggcaaaaagttagtgagaaaatgtg |
8438 |
T |
|
| Q |
333 |
tgggttcacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatggacttctgt |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| ||| || |||| | ||||||||||||| |||||| |
|
|
| T |
8437 |
tgggttcacctcttgctgctaaagtattgggtagcagtttgtgctgtacaagcaacgaacatcaatggatttctgt |
8362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 167 - 400
Target Start/End: Complemental strand, 18154 - 17918
Alignment:
| Q |
167 |
acacgacttgacattgttgcatccatcatgggaactca---tgctcatcctttatcacggttatctaatgatgacatctggtctttgttcaaacaacatg |
263 |
Q |
| |
|
||||||||||| |||||||||||||||| | || |||| |||||| | ||| | | |||| | |||||||||| ||||| || || |||||||||| |
|
|
| T |
18154 |
acacgacttgagattgttgcatccatcacgtgatctcaccctgctcaccatttggtaggtttatatgatgatgacatttggtcattatttaaacaacatg |
18055 |
T |
|
| Q |
264 |
cttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctcttgctgctaaagtattggg |
363 |
Q |
| |
|
|| ||||| ||||| | || | ||| |||||||||| | |||||| | || ||||||||||||| |||||||||||||||||||| || || ||||| |
|
|
| T |
18054 |
ctgttggaccaaatggggaggagcgcgcagagcttgcagcaataggtaaggagatagtgagaaaatgcgtgggttcacctcttgctgccaaggttttggg |
17955 |
T |
|
| Q |
364 |
aagccttttgcgctttaaaagcgatgaacatcaatgg |
400 |
Q |
| |
|
||||||| ||||||||||||| || |||||||||||| |
|
|
| T |
17954 |
aagccttctgcgctttaaaagtgaggaacatcaatgg |
17918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 142 - 400
Target Start/End: Complemental strand, 4797 - 4535
Alignment:
| Q |
142 |
gaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactcat---gctcatcctttatcacggttatctaatgatgac |
238 |
Q |
| |
|
||||||||||||| ||||||| || || ||||||||||||||||||| |||||||||||| || ||||||| ||| | | | |||||| |||||| | |
|
|
| T |
4797 |
gaaaggtgcatcagttttggtcacaaccagacttgacattgttgcatcaatcatgggaacttatcctgctcatcatttgttaggcttatctgatgatgcc |
4698 |
T |
|
| Q |
239 |
atctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggtt |
338 |
Q |
| |
|
||||||| |||||| |||||| | ||||||| | |||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
4697 |
atctggtatttgtttaaacaaaaagcttttgaaacaaatagagaagagcgtgcagagcttgtggcaataggcaaggagttagtgagaaaatgtgtgggtt |
4598 |
T |
|
| Q |
339 |
cacctcttgctgctaaagtattgggaagcc-ttttgcgctttaaaagcgatgaacatcaatgg |
400 |
Q |
| |
|
| ||||||||||| |||||| | ||||||| |||||||||||||||| || |||||||||||| |
|
|
| T |
4597 |
cgcctcttgctgccaaagtactaggaagcctttttgcgctttaaaagtgaggaacatcaatgg |
4535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 142 - 400
Target Start/End: Complemental strand, 9477 - 9216
Alignment:
| Q |
142 |
gaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactcat---gctcatcctttatcacggttatctaatgatgac |
238 |
Q |
| |
|
||||||||||||| ||||||| || || ||||||||||||||||||| |||||||||||| || ||||||| ||| | | | |||||| |||||| | |
|
|
| T |
9477 |
gaaaggtgcatcagttttggtcacaaccagacttgacattgttgcatcaatcatgggaacttatcctgctcatcatttgttaggcttatctgatgatgcc |
9378 |
T |
|
| Q |
239 |
atctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggtt |
338 |
Q |
| |
|
||||||| |||||| |||||| | ||||||| | |||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
9377 |
atctggtatttgtttaaacaaaaagcttttgaaacaaatagagaagagcgtgcagagcttgtggcaataggcaaggagttagtgagaaaatgtgtgggtt |
9278 |
T |
|
| Q |
339 |
cacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatgg |
400 |
Q |
| |
|
| |||||||| || |||||| | ||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
9277 |
cgcctcttgccgccaaagtactaggaagtcttttgcgctttaaaagtgaggaacatcaatgg |
9216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 142 - 400
Target Start/End: Original strand, 38939396 - 38939657
Alignment:
| Q |
142 |
gaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactca---tgctcatcctttatcacggttatctaatgatgac |
238 |
Q |
| |
|
|||||| ||||| ||||| || || ||||||||||| |||||||||||||||||||||||||| |||||| | ||| | | |||| | |||| ||| |
|
|
| T |
38939396 |
gaaaggggcatctattttagtcacaacacgacttgagattgttgcatccatcatgggaactcaccctgctcaccatttggtaggtttatatgatgacgac |
38939495 |
T |
|
| Q |
239 |
atctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggtt |
338 |
Q |
| |
|
|| ||||| || || |||||||||||||||||| || || | |||| || |||||||||||| | ||||||| | || ||||||||||||||||||||| |
|
|
| T |
38939496 |
atttggtcattatttaaacaacatgcttttggaccagatggggaagagcatgcagagcttgtagcaataggcaaggagatagtgagaaaatgtgtgggtt |
38939595 |
T |
|
| Q |
339 |
cacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatgg |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
38939596 |
cacctcttgctgccaaagtattgggaagccttttgcgctttaaaagtgaggaacatcaatgg |
38939657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 142 - 400
Target Start/End: Original strand, 7053303 - 7053564
Alignment:
| Q |
142 |
gaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactcatgc---tcatcctttatcacggttatctaatgatgac |
238 |
Q |
| |
|
||||||| |||||||||| || |||||| ||||||| ||||||||||| |||||||||||||| | ||||| |||| | | |||||| |||||||| |
|
|
| T |
7053303 |
gaaaggttcatcaattttagtcactacaagacttgaaattgttgcatctatcatgggaactcaaccccgtcatcttttagtaggtttatctgatgatgac |
7053402 |
T |
|
| Q |
239 |
atctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggtt |
338 |
Q |
| |
|
|| ||| ||||||||||||| | |||||||| ||||| |||||| || ||||||||||| ||||||| | || ||||||||||||||||||||| |
|
|
| T |
7053403 |
atttggcctttgttcaaacactgtacttttggaccaaatggagaagagcatgcagagcttgccacaataggcaaggagatagtgagaaaatgtgtgggtt |
7053502 |
T |
|
| Q |
339 |
cacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatgg |
400 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||| || |||||| | || ||||||||||| |
|
|
| T |
7053503 |
cacctcttgcagcaaaagtattaggaagccttttacgatttaaacgtgagaaacatcaatgg |
7053564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 150 - 400
Target Start/End: Complemental strand, 13378207 - 13377954
Alignment:
| Q |
150 |
catcaattttggtaactacacgacttgacattgttgcatccatcatgggaactca---tgctcatcctttatcacggttatctaatgatgacatctggtc |
246 |
Q |
| |
|
|||||||||| || ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||| | | ||| | |||| ||||| ||||| |
|
|
| T |
13378207 |
catcaattttagtcactacgcgacttgagattgttgcatccatcatgggaactcaccctgctcatcatttggtaggattacatgatgaagacatttggtc |
13378108 |
T |
|
| Q |
247 |
tttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggttcacctctt |
346 |
Q |
| |
|
|||||| |||| ||||||| ||||| | ||| | |||| |||||||||||||| | ||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
13378107 |
tttgtttaaactacatgctattggacctaatggggaagagcgtgcagagcttgcagcaataggcaaggagatagtgagaaaatgtgtgggttcacctctt |
13378008 |
T |
|
| Q |
347 |
gctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatgg |
400 |
Q |
| |
|
||||| || || ||||||||||||| |||||||||||| || |||||||||||| |
|
|
| T |
13378007 |
gctgccaaggttttgggaagcctttcgcgctttaaaagtgaggaacatcaatgg |
13377954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 142 - 400
Target Start/End: Complemental strand, 9268 - 9014
Alignment:
| Q |
142 |
gaaaggtgcatcaattttggtaactacacgacttgacattgttgcatccatcatgggaactca---tgctcatcctttatcacggttatctaatgatgac |
238 |
Q |
| |
|
|||||||||||| ||||| || || ||||||||||| |||||||||||||||||||||||||| |||||| | ||| | | |||| | |||| ||| |
|
|
| T |
9268 |
gaaaggtgcatctattttagtcacaacacgacttgatattgttgcatccatcatgggaactcaccctgctcaccatttggtaggtttatatgatgacgac |
9169 |
T |
|
| Q |
239 |
atctggtctttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaataggccaaaagttagtgagaaaatgtgtgggtt |
338 |
Q |
| |
|
|| ||||| || || |||||||||||||||||| | || | |||| ||||| | | ||||||| | || | ||||||||||||||||||| |
|
|
| T |
9168 |
atttggtcattatttaaacaacatgcttttggacctgatggggaagagcgtgagaaac-------aataggcaaggagattgtgagaaaatgtgtgggtt |
9076 |
T |
|
| Q |
339 |
cacctcttgctgctaaagtattgggaagccttttgcgctttaaaagcgatgaacatcaatgg |
400 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| |||||||||| || |||||||||||| |
|
|
| T |
9075 |
cacctcttgctgccaaagtattgggaagtcttttgtgctttaaaagtgaggaacatcaatgg |
9014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 309
Target Start/End: Complemental strand, 30207146 - 30207085
Alignment:
| Q |
248 |
ttgttcaaacaacatgcttttggagcaaatagagaagggcgtgcagagcttgtggaaatagg |
309 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30207146 |
ttgttcaaacaatatgcatttggacaaaatagagaagagcgtgcagagcttgtggaaatagg |
30207085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University