View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_60 (Length: 492)
Name: NF1343_low_60
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_60 |
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| [»] chr2 (4 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 253 - 492
Target Start/End: Complemental strand, 5301870 - 5301631
Alignment:
| Q |
253 |
tggcgttagaaaaacttatcatcgtggatttgtcaattgttatataagtctgttttgattgatttatttgagcttatgtattttataggcacttgtaaga |
352 |
Q |
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| T |
5301870 |
tggcgttagaaaaacttatcatcgtggatttgttaattgttatataagtctgttttgattgatttatttgaacttatgtattttataggcacttgtaaga |
5301771 |
T |
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| Q |
353 |
ctaatcgagagagcttatagaaaaacaactcataacatgtccataagttgttcagtttattttattttcgttgtgagatagcttatgatataaacacttt |
452 |
Q |
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| T |
5301770 |
ctaatcgagagagcttatagaaaaacaactcataacatgtccataagttgttcggtttattttatttttgttgtgagatagcttatgatataaacacttt |
5301671 |
T |
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| Q |
453 |
attaagttgttgatccaatcaagctttgttcttttgttgt |
492 |
Q |
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| T |
5301670 |
attaagttgttgatccaatcaagctttgttcttttgttgt |
5301631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 5302124 - 5302005
Alignment:
| Q |
1 |
ggaataaagaagattttgaaaaagatttgttgtctcgatactttaaccataataacttctcaagtttcatcagacagcttaatacctatgtaagcgcctt |
100 |
Q |
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| T |
5302124 |
ggaataaagaagattttgaaaaagatttgttgtctcgatactttaaccataataatttctcaagtttcatcagacagcttaatacctatgtaagcgcctt |
5302025 |
T |
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| Q |
101 |
taatgtacttcatttcatgg |
120 |
Q |
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| T |
5302024 |
taatgtacttcatttcatgg |
5302005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 19100438 - 19100335
Alignment:
| Q |
12 |
gattttgaaaaagatttgttgtctcgatactttaaccataataacttctcaagttt-catcagacagcttaatacctatgtaagcgcctttaatgtactt |
110 |
Q |
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| T |
19100438 |
gattttgtaaaagatttgttacctagacactttaagcataataacttctcaagtttccatc-gacaattgaatacatatgtaagcaattttaatgtactt |
19100340 |
T |
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| Q |
111 |
cattt |
115 |
Q |
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| T |
19100339 |
cattt |
19100335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 19100135 - 19100082
Alignment:
| Q |
303 |
tgttttgattgatttatttgagcttatgtatttt-ataggcacttgtaagacta |
355 |
Q |
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| T |
19100135 |
tgtttcgattgatttatttgagtttatgtattttcataagcacttgtaagacta |
19100082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 302 - 492
Target Start/End: Original strand, 15620314 - 15620502
Alignment:
| Q |
302 |
ctgttttgattgatttatttgagcttatgtatttt-ataggcacttgtaagactaatcgagagagcttatagaaaaacaactcataacatgtccataagt |
400 |
Q |
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| T |
15620314 |
ctgtttagatttattcatttgaatatatgtattttcataagcacttgtgagattgattgagagagtttata---aaacaacttataacatgtccataagt |
15620410 |
T |
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| Q |
401 |
tgttcagtttattttattttcgttgt-gagatagcttatgatataaacactttattaagttgttgatccaatcaagctttgttcttttgttgt |
492 |
Q |
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| T |
15620411 |
tgtaaagtttattg-atttttgttgtagacattggttatgatataagcacattattaagttgttgatccaattaggccttgttcttttgttgt |
15620502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 15620100 - 15620162
Alignment:
| Q |
22 |
aagatttgttgtctcgatactttaaccataataacttctcaagtttcatcagacagcttaata |
84 |
Q |
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| T |
15620100 |
aagatttgttgcctaaatactttaagcaaaataacttctcaaatttcatcaggcagcttaata |
15620162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 20681554 - 20681630
Alignment:
| Q |
34 |
ctcgatactttaaccataataacttctcaagtttcatcagacagcttaatacctatgtaagcgcctttaatgtacttc |
111 |
Q |
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| T |
20681554 |
ctcgatattttaagcataataacttctcaagtttcaacagaca-ttgaatacacatgtaagcaactttaatgtacttc |
20681630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 413
Target Start/End: Original strand, 20681865 - 20681970
Alignment:
| Q |
303 |
tgttttgattgatttatttgagcttatgtatttt-ataggcacttgtaagactaatcgagagagcttatagaaaaacaactcataacatgtccataagtt |
401 |
Q |
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| T |
20681865 |
tgttttaattgatttctttgagtttatgtattttcataatcacttgtgagactaat----ggagcttatag--aaacaactaataacatgtctataagtt |
20681958 |
T |
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| Q |
402 |
gttcagtttatt |
413 |
Q |
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|||| |||||| |
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| T |
20681959 |
tttcactttatt |
20681970 |
T |
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