View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_64 (Length: 475)
Name: NF1343_low_64
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 2 - 447
Target Start/End: Original strand, 41908304 - 41908749
Alignment:
| Q |
2 |
gtggagtagcataggaagggtaaccagaaattggtggagataattgttgacatggtggatcacatttaggatcacctaatgcattcccataagcttcaaa |
101 |
Q |
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|||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41908304 |
gtggagcaccataagaagggtaaccagaaattggtggagataattgttgacatggtggatcacatttaggatcacctaatgcattcccataagcttcaaa |
41908403 |
T |
|
| Q |
102 |
agtaaaataaggcactactaacaaaagggtcaaagctacaagtttcagtgactttgcttgaaacannnnnnnnaattttaaagttgaaggtttcaatttc |
201 |
Q |
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| T |
41908404 |
agtaaaataagacactactaacaaaagggtcaaagctacaagtttcagtgactttgcttgaaacattttttttaattttaaagttgaaggtttcaatttc |
41908503 |
T |
|
| Q |
202 |
aatcattttagtatatctgacttaactttataggaaaagagtgttgtagaagtttctgtttttgatgtgtaatcagcacctggctaatacggtcttggat |
301 |
Q |
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| T |
41908504 |
aatcattttagtatatctgacttaactttataggaaaagagtgttgtagaagtttctgtttttgatgtgtaatcagcacctggctaatacggtcttggat |
41908603 |
T |
|
| Q |
302 |
cattcgcctctttttgttctgcttagaaggatacggtgccacatgccacaacatttgtcacatttatattgaatcaccacatatggatcactttgcatgt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41908604 |
cattcgcctctttttgttctgcttagaaggatacggtgccacatgccacaacatttgtcacatttatattgaatcaccacatatggatcactttgcatgt |
41908703 |
T |
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| Q |
402 |
gtatgtcaacaaaaaatcgttaaaaattaatttcaacatttctttt |
447 |
Q |
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| T |
41908704 |
gtatgtcaacaaaaaatcgttaaaaattaatttcaacatttctttt |
41908749 |
T |
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