View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_65 (Length: 474)
Name: NF1343_low_65
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 3181791 - 3182148
Alignment:
| Q |
16 |
atatcaaatcaaaattcattagcaaccctaaatattagtatgtaaaggtcagagtttgaaccctaaattctccacttgccactatactacttgacaaaaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3181791 |
atatcaaatcaaaattcattagcaaccctaaatattagtatgtaaaggt---agtttgaaccctaaattctccacttgccactatactacttgacaaaaa |
3181887 |
T |
|
| Q |
116 |
cgacaaagttgcgaaatttgggtcaaaagtatattagattatgtgctcaacctagtaaatactcaccagctgaaacttggtagccatgcaatcttagtaa |
215 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3181888 |
cgacacagttgcgaaatttgggtcaaaagtatattatattatgtgctcaacttaggaaatactcaccagctgaaacttggtagccatgcaatcttagtaa |
3181987 |
T |
|
| Q |
216 |
cctgaaagccattgctgtgtcgtcaatatcttgaacatttgaatttcttgcccaacaaatgcccttttcagtccaatatctgaaatttcaaatatacatc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3181988 |
cctgaaagccattgctgtgtcgtcaatatcttgaacatttgaatttcttgcccaacaaatgcccttttcagtccaatatctgaaatttcaattatacatc |
3182087 |
T |
|
| Q |
316 |
atattcaattaatttgttcaaaagggtataattgcaaaatattaatttgagggtcattatt |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3182088 |
atattcaattaatttgttcaaaagggtataattgcaaaatattaatttgagggtcattatt |
3182148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 172 - 303
Target Start/End: Complemental strand, 3229581 - 3229450
Alignment:
| Q |
172 |
aaatactcaccagctgaaacttggtagccatgcaatcttagtaacctgaaagccattgctgtgtcgtcaatatcttgaacatttgaatttcttgcccaac |
271 |
Q |
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|||||||||| ||||| || |||| |||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| | || |
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| T |
3229581 |
aaatactcactggctgagacatggtggccatgtaatcttagtaatctgaaagccattgatgtgtcatcaatatcttgaacatttgaatttcttccggaaa |
3229482 |
T |
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| Q |
272 |
aaatgcccttttcagtccaatatctgaaattt |
303 |
Q |
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| T |
3229481 |
agatgcccttttcagtccaatatctgaaattt |
3229450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 296
Target Start/End: Complemental strand, 37959073 - 37958957
Alignment:
| Q |
180 |
accagctgaaacttggtagccatgcaatcttagtaacctgaaagccattgctgtgtcgtcaatatcttgaacatttgaatttcttgcccaacaaatgccc |
279 |
Q |
| |
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||||| ||||||||||| ||||||||| ||||| | || || |||||||||||||||| ||||||||||| | ||||||||| ||||| ||||| || |
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| T |
37959073 |
accaggtgaaacttggtggccatgcaaccttaggattctaaatcccattgctgtgtcgtctatatcttgaacctctgaatttctcgcccagcaaatacct |
37958974 |
T |
|
| Q |
280 |
ttttcagtccaatatct |
296 |
Q |
| |
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|| | |||||||||||| |
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| T |
37958973 |
ttcttagtccaatatct |
37958957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 296
Target Start/End: Original strand, 12635648 - 12635758
Alignment:
| Q |
186 |
tgaaacttggtagccatgcaatcttagtaacctgaaagccattgctgtgtcgtcaatatcttgaacatttgaatttcttgcccaacaaatgcccttttca |
285 |
Q |
| |
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||||||||||| ||||||||| || || | || || |||||| | |||| || ||||||||||| | ||||||||||||||| ||||| || || ||| |
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| T |
12635648 |
tgaaacttggtggccatgcaacctaagcagtctaaatcccattgttatgtcatctatatcttgaacctatgaatttcttgcccagcaaatacctttctca |
12635747 |
T |
|
| Q |
286 |
gtccaatatct |
296 |
Q |
| |
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|||||||||| |
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|
| T |
12635748 |
atccaatatct |
12635758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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