View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_low_66 (Length: 470)

Name: NF1343_low_66
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_low_66
NF1343_low_66
[»] chr6 (15 HSPs)
chr6 (42-441)||(10925276-10925664)
chr6 (42-264)||(20348932-20349154)
chr6 (150-252)||(27738747-27738849)
chr6 (150-210)||(10188126-10188186)
chr6 (178-264)||(256490-256577)
chr6 (64-203)||(8320855-8320994)
chr6 (42-141)||(9402456-9402555)
chr6 (150-252)||(2367301-2367403)
chr6 (174-252)||(7393898-7393976)
chr6 (150-252)||(32532515-32532617)
chr6 (150-252)||(32853819-32853921)
chr6 (183-252)||(28079707-28079776)
chr6 (183-244)||(32959868-32959929)
chr6 (150-210)||(12141360-12141420)
chr6 (176-252)||(29199896-29199972)
[»] chr8 (18 HSPs)
chr8 (92-263)||(30903963-30904134)
chr8 (151-306)||(30481372-30481533)
chr8 (42-211)||(36274910-36275078)
chr8 (42-211)||(17108241-17108412)
chr8 (42-169)||(5793452-5793579)
chr8 (42-247)||(28345358-28345563)
chr8 (159-350)||(17084020-17084211)
chr8 (184-264)||(2183604-2183685)
chr8 (104-247)||(5700285-5700428)
chr8 (98-211)||(9476065-9476178)
chr8 (98-213)||(29918530-29918645)
chr8 (148-264)||(14155505-14155622)
chr8 (150-246)||(14186295-14186391)
chr8 (147-247)||(39379596-39379695)
chr8 (150-245)||(45236040-45236135)
chr8 (150-252)||(20399567-20399669)
chr8 (150-252)||(24870035-24870137)
chr8 (42-78)||(30481545-30481581)
[»] chr2 (12 HSPs)
chr2 (99-342)||(17845318-17845556)
chr2 (149-252)||(45256798-45256901)
chr2 (98-239)||(25210301-25210442)
chr2 (98-245)||(30696848-30696995)
chr2 (92-242)||(13531867-13532017)
chr2 (147-252)||(34458844-34458948)
chr2 (150-252)||(13705372-13705474)
chr2 (150-252)||(37999459-37999561)
chr2 (149-252)||(35965310-35965412)
chr2 (185-247)||(3547177-3547239)
chr2 (150-252)||(9632362-9632464)
chr2 (150-210)||(10920621-10920681)
[»] chr7 (15 HSPs)
chr7 (42-164)||(6557825-6557947)
chr7 (150-245)||(26622931-26623026)
chr7 (178-258)||(12980385-12980465)
chr7 (104-247)||(23475279-23475423)
chr7 (44-172)||(31345400-31345528)
chr7 (102-252)||(29292634-29292786)
chr7 (150-210)||(38152867-38152927)
chr7 (159-247)||(45380096-45380184)
chr7 (104-162)||(11472813-11472871)
chr7 (150-252)||(25979928-25980030)
chr7 (150-252)||(41103636-41103738)
chr7 (150-252)||(43507425-43507527)
chr7 (159-252)||(23533615-23533707)
chr7 (204-248)||(6557740-6557784)
chr7 (150-210)||(16866149-16866209)
[»] chr4 (25 HSPs)
chr4 (42-252)||(42907760-42907969)
chr4 (42-252)||(33516083-33516295)
chr4 (176-247)||(1866566-1866637)
chr4 (43-246)||(21713993-21714196)
chr4 (151-306)||(19883008-19883169)
chr4 (106-264)||(21956813-21956971)
chr4 (94-211)||(4741269-4741385)
chr4 (104-245)||(25298852-25298992)
chr4 (42-170)||(8843898-8844026)
chr4 (42-170)||(8856862-8856990)
chr4 (176-252)||(14605937-14606013)
chr4 (42-113)||(24474965-24475036)
chr4 (148-246)||(16575091-16575189)
chr4 (164-293)||(29527807-29527930)
chr4 (98-211)||(36919052-36919165)
chr4 (148-211)||(23927694-23927756)
chr4 (147-245)||(33916134-33916233)
chr4 (178-259)||(21544588-21544670)
chr4 (150-252)||(31752437-31752539)
chr4 (156-210)||(53906359-53906413)
chr4 (159-252)||(6382284-6382377)
chr4 (56-221)||(12505573-12505738)
chr4 (190-246)||(15733544-15733600)
chr4 (150-210)||(47550407-47550467)
chr4 (150-210)||(48459462-48459522)
[»] chr1 (19 HSPs)
chr1 (105-262)||(48125683-48125841)
chr1 (148-264)||(13798212-13798329)
chr1 (98-200)||(39219182-39219284)
chr1 (98-247)||(42728960-42729109)
chr1 (150-264)||(9982888-9983003)
chr1 (150-252)||(45866196-45866298)
chr1 (148-204)||(10105240-10105296)
chr1 (42-154)||(13692512-13692624)
chr1 (150-210)||(42439723-42439783)
chr1 (159-347)||(16903508-16903702)
chr1 (178-252)||(23058470-23058544)
chr1 (150-252)||(49250784-49250886)
chr1 (108-193)||(33293590-33293675)
chr1 (156-264)||(34085217-34085326)
chr1 (128-348)||(47644781-47644994)
chr1 (92-241)||(48576140-48576289)
chr1 (156-252)||(9681791-9681886)
chr1 (150-210)||(23490824-23490884)
chr1 (150-210)||(29936392-29936452)
[»] scaffold0198 (1 HSPs)
scaffold0198 (147-261)||(20740-20855)
[»] chr5 (16 HSPs)
chr5 (164-252)||(2681205-2681293)
chr5 (178-252)||(23045003-23045077)
chr5 (106-264)||(29664902-29665059)
chr5 (150-252)||(4920801-4920903)
chr5 (108-221)||(7350450-7350563)
chr5 (95-252)||(6810078-6810235)
chr5 (128-306)||(16311245-16311429)
chr5 (148-244)||(40187677-40187772)
chr5 (178-252)||(12712569-12712643)
chr5 (183-264)||(28569020-28569102)
chr5 (231-347)||(39422402-39422524)
chr5 (94-195)||(12457436-12457537)
chr5 (108-264)||(38972855-38973012)
chr5 (43-123)||(12770626-12770706)
chr5 (184-252)||(12773833-12773901)
chr5 (128-212)||(18451937-18452021)
[»] scaffold0005 (1 HSPs)
scaffold0005 (176-252)||(211365-211441)
[»] chr3 (11 HSPs)
chr3 (148-341)||(42243360-42243559)
chr3 (150-252)||(44172601-44172703)
chr3 (150-252)||(44179301-44179403)
chr3 (70-170)||(37032191-37032291)
chr3 (150-210)||(39728646-39728706)
chr3 (150-210)||(44639249-44639309)
chr3 (151-210)||(52198131-52198190)
chr3 (149-210)||(23546995-23547056)
chr3 (106-211)||(40890278-40890382)
chr3 (150-210)||(17146203-17146263)
chr3 (150-210)||(48305694-48305754)
[»] scaffold0036 (1 HSPs)
scaffold0036 (166-252)||(33384-33470)
[»] scaffold0157 (1 HSPs)
scaffold0157 (56-221)||(14739-14904)
[»] scaffold0009 (1 HSPs)
scaffold0009 (148-212)||(107442-107506)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 42 - 441
Target Start/End: Complemental strand, 10925664 - 10925276
Alignment:
Q  42 ggagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataa 141  Q
    |||||| |||||| ||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  10925664 ggagaagagagagaacttagagaagtgagtgtcgtttgaaagactaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataa 10925565  T
Q  142 tacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttga 241  Q
     | | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||    
T  10925564 aaggaataataaattatttttttacattcggaatgagtttaggtatgggttcggggtggatacttatatctccattacccatctcgtacccatgttttga 10925465  T
Q  242 aatcggagaaatccaaactcataaccctatcaaagcggggaaactccgtcaatttaggtttggtttagaaggttactcacagatatgtgttttgttgcca 341  Q
    || ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||           ||||||||||||||    
T  10925464 aaacggagaaatccaaactcataaccctatcaaagcggggaaaccccgtcaatttagatttggttcagaaggtta-----------gtgttttgttgcca 10925376  T
Q  342 tgtctagatctgacagaagggctagactttcaaatttagtgtctcaaaggattaacaaaaacacatttttgaaggagaaagaattaacaaggatacgaca 441  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10925375 tgtctaaatctgacagaagggctagactttcaaatttagtgtctcaaaggattaacaaaaacacatttttgaaggagaaaggattaacaaggatacgaca 10925276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 42 - 264
Target Start/End: Original strand, 20348932 - 20349154
Alignment:
Q  42 ggagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctattt-atata 140  Q
    ||||||||||||| |||  || |||| |||||| |||||| | |||| ||| ||| ||||  |||||| |||||||| ||||  | || ||||| |||||    
T  20348932 ggagaaaagagagaactatgataagtaagtgtcatctgaaagtccaagactctgagtgtg--agtgaagtgatttagggtttgagtttatattttatata 20349029  T
Q  141 atacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttg 240  Q
    | | || |||||||||||||||||||||| | || |  ||| |||||| ||||||||||| ||| ||||||  | |||| | || | || ||||||||||    
T  20349030 aaaagtgtaataaattaattttttacatttgcaacggatttgggtatgagttcggggtgggtacctatatccccgttactcgtcccatacccgtgttttg 20349129  T
Q  241 aaatcggag-aaatccaaactcata 264  Q
    ||||||| | |||||||||||||||    
T  20349130 aaatcggggaaaatccaaactcata 20349154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 27738747 - 27738849
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| ||| ||||| |   |||||| || | || ||||||||||||||||| |    
T  27738747 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacatatatatctgttacccgtcccatacccgtgttttgaaatcgggg 27738846  T
Q  250 aaa 252  Q
    |||    
T  27738847 aaa 27738849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 10188186 - 10188126
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || ||| |||| |||||||||||||||||| ||| |||||    
T  10188186 ataaaataattttttacatttgggatgggtttgggtatgggttcggggtgggtacctatat 10188126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 256577 - 256490
Alignment:
Q  178 gtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaatc-caaactcata 264  Q
    |||| |||||||||| ||||||| ||| |||||   |||||||| ||||||| || |||||||||||||| |||| | ||||||||||    
T  256577 gtttgggtatgggtttggggtgggtacctatatgcccattacccgtctcgtacccatgttttgaaatcggggaaaactcaaactcata 256490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 8320994 - 8320855
Alignment:
Q  64 aagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttt 163  Q
    |||||| ||||||||||| |||| | ||| ||| ||||| ||||||||||||||| ||||  | |||||||||  |||   |  |||||| || ||||||    
T  8320994 aagtgaatgtcgtctgaaagaccgagactctgactgtgtaagtgaaatgatttagggtttaagtttctatttacgtaaatggagtaataagttgattttt 8320895  T
Q  164 tacattcggaatgagtttaggtatgggttcggggtggata 203  Q
    | ||||| ||| | || | |||||||||||||||| ||||    
T  8320894 tgcattcagaacgggtctgggtatgggttcggggtcgata 8320855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 9402456 - 9402555
Alignment:
Q  42 ggagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataa 141  Q
    ||||||||||||| |||  || ||||||||||  | |||| |||| | ||| ||| ||||| ||||||||||||||| ||||  | ||||||||||||||    
T  9402456 ggagaaaagagagaactatgataagtgagtgtgatatgaaagacctagactctgactgtgtgagtgaaatgatttagggtttgggtttctatttatataa 9402555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 2367301 - 2367403
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| ||||||||| |||| || | | |||| |||||||||||||||||| |||||||||   | |||||| || | || ||||||||||| ||||| |    
T  2367301 ataaagtaattttttccatttgggacgggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcgggg 2367400  T
Q  250 aaa 252  Q
    |||    
T  2367401 aaa 2367403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 252
Target Start/End: Complemental strand, 7393976 - 7393898
Alignment:
Q  174 atgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||||||||  ||||||||||||||||||||| |||||   ||||| || |||| ||  |||||||||||||||| ||||    
T  7393976 atgagtttgagtatgggttcggggtggatacctatatacccattatccgtctcttactcgtgttttgaaatcggggaaa 7393898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 32532515 - 32532617
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | || |  ||||||||||||||||| ||| |||||   |||||||| || | || ||||||||||||||||| |    
T  32532515 ataaagtaattttttacatttgggacgggtatgagtatgggttcggggtgggtacctatatacccattacccgtcccatacccgtgttttgaaatcgggg 32532614  T
Q  250 aaa 252  Q
    |||    
T  32532615 aaa 32532617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 32853819 - 32853921
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| ||| |||||   | |||||| || | || ||||||||||| ||||| |    
T  32853819 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcgggg 32853918  T
Q  250 aaa 252  Q
    |||    
T  32853919 aaa 32853921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 28079776 - 28079707
Alignment:
Q  183 ggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||||||||||||||||| ||| ||||||  | |||||| || |||| || |||||||||||||| ||||    
T  28079776 ggtatgggttcggggtgggtacctatatccccgttacccgtcccgtacccatgttttgaaatcggggaaa 28079707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 32959868 - 32959929
Alignment:
Q  183 ggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaat 244  Q
    |||||||||||||||||||||| ||||||  | |||||| |  |||| ||||||||||||||    
T  32959868 ggtatgggttcggggtggatacctatatccccgttacccgttccgtacccgtgttttgaaat 32959929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 12141360 - 12141420
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| ||| |||||    
T  12141360 ataaaataattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatat 12141420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 29199972 - 29199896
Alignment:
Q  176 gagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||||| |||||||||||||||| ||||| ||||||    |||||| || |||| |||| |||||||||||| ||||    
T  29199972 gagtttgggtatgggttcggggtagatacatatatccctgttacccgtcccgtacccgtattttgaaatcggggaaa 29199896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 263
Target Start/End: Original strand, 30903963 - 30904134
Alignment:
Q  92 tttgattgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaa-tgagtttaggtatggg 190  Q
    ||||| ||||| ||||||||||||||  ||||  | |||||||||||||| | || ||||||||| ||||| ||||||||| | ||| ||| ||||||||    
T  30903963 tttgactgtgtgagtgaaatgatttaaggttttggtttctatttatataaaatgtgtaataaattgattttctacattcgggactga-tttgggtatggg 30904061  T
Q  191 ttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaatccaaactcat 263  Q
    |  ||||||| ||||||||||| |||||||| ||||||| ||||||||||||||||  |||| ||||||||||    
T  30904062 tatggggtgggtacttatatctccattacccgtctcgtacccgtgttttgaaatcgaggaaacccaaactcat 30904134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 151 - 306
Target Start/End: Complemental strand, 30481533 - 30481372
Alignment:
Q  151 taaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc-ggag 249  Q
    |||||||||||||||||||||| | |||||| |||||||||||||||||| ||| |||||| ||||||| | |||| ||  ||| |||||||||| |||     
T  30481533 taaattaattttttacattcgggacgagtttgggtatgggttcggggtgggtacctatatcctcattactcgtctcatactcgtattttgaaatcaggaa 30481434  T
Q  250 aaatccaaactcat-----aaccctatcaaagcggggaaactccgtcaatttaggtttggtt 306  Q
    ||| ||||||||||     ||||| |||||| | |||||| ||| |||||||||||||||||    
T  30481433 aaacccaaactcatactcaaacccaatcaaaacagggaaaatccatcaatttaggtttggtt 30481372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 211
Target Start/End: Original strand, 36274910 - 36275078
Alignment:
Q  42 ggagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataa 141  Q
    ||||||||| ||| |||  || ||||||||||| |||||| |||| | ||||||| ||||| ||||||||||||||| |||   | ||||||||||||||    
T  36274910 ggagaaaagggaggactatgataagtgagtgtcatctgaaagaccgagactttgactgtgtgagtgaaatgatttagggttgg-gtttctatttatataa 36275008  T
Q  142 tacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatc 211  Q
     | | ||| |||||| ||||||||||||||| |   ||||||||||||||||||||||  ||||||||||    
T  36275009 aagggatagtaaattgattttttacattcgggacatgtttaggtatgggttcggggtgagtacttatatc 36275078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 42 - 211
Target Start/End: Original strand, 17108241 - 17108412
Alignment:
Q  42 ggagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaac--tttgattgtgttagtgaaatgatttagtgtttctgattctatttatat 139  Q
    |||||| |||||| ||| |||||||| |||||||| ||||  ||| | ||  ||||||||||| |||||||| |||||| ||||  | ||||||||||||    
T  17108241 ggagaagagagagaactgagagaagtaagtgtcgtttgaaataccgagacactttgattgtgtgagtgaaattatttagggtttaagtttctatttatat 17108340  T
Q  140 aatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatc 211  Q
    || | | |||||||||| |||||||||| |||| |||||||| |||||  ||||| ||||  ||||||||||    
T  17108341 aaaatggataataaattgattttttacaatcgggatgagtttgggtataagttcgaggtgtgtacttatatc 17108412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 169
Target Start/End: Original strand, 5793452 - 5793579
Alignment:
Q  42 ggagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataa 141  Q
    ||||||||||||| ||||| |||||||||||||||| ||| |||  | |||||| |||||| ||||||||||||||| ||||  | ||||||||||||||    
T  5793452 ggagaaaagagagaacttaaagaagtgagtgtcgtcagaaagacttagactttggttgtgtgagtgaaatgatttagggtttgagtttctatttatataa 5793551  T
Q  142 tacgtataataaattaattttttacatt 169  Q
     |   ||||| |||| ||||||||||||    
T  5793552 aaatgataattaattgattttttacatt 5793579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 247
Target Start/End: Original strand, 28345358 - 28345563
Alignment:
Q  42 ggagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataa 141  Q
    ||||| ||||||| |||  || ||||||||||| ||||||  ||  | ||| ||| ||||| |||||||||||||||  |||| | ||||||||||||||    
T  28345358 ggagataagagagaactatgataagtgagtgtcatctgaaatactgagactatgactgtgtgagtgaaatgatttagaatttcggtttctatttatataa 28345457  T
Q  142 tacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttga 241  Q
     | |  ||||| ||| ||||| ||||||| | |  ||||| |||||||||||||||||| | | |||||| || |||||||||  ||| ||||||||||     
T  28345458 aaggggtaatatatttattttctacattcaggacaagtttgggtatgggttcggggtgggtgcctatatcctcgttacccatcctgtacccgtgttttgg 28345557  T
Q  242 aatcgg 247  Q
    ||||||    
T  28345558 aatcgg 28345563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 159 - 350
Target Start/End: Complemental strand, 17084211 - 17084020
Alignment:
Q  159 ttttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaatccaaa 258  Q
    |||||||||||||  ||| |||| | |||| ||||||||||| ||  ||||||  | |||||| ||||||| ||||||||| |||||||||||| || ||    
T  17084211 ttttttacattcgtgatgggtttggatatgagttcggggtgggtatctatatccccgttacccgtctcgtacccgtgttttaaaatcggagaaaacccaa 17084112  T
Q  259 ctcataaccctatcaaagcggggaaactccgtcaatttaggtttggtttagaaggttactcacagatatgtgttttgttgccatgtctagat 350  Q
     ||| |||||  ||||||||||||||  ||||||| ||   |||||||  |  || ||| ||||  |||| ||||||||| |||||||||||    
T  17084111 atcaaaacccagtcaaagcggggaaaacccgtcaacttgaatttggttcgggtgggtacccacaagtatgggttttgttgtcatgtctagat 17084020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 2183685 - 2183604
Alignment:
Q  184 gtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag-aaatccaaactcata 264  Q
    ||||| ||||||||||| ||| ||||||| |||||||  ||||||| |||| |||||||||||||| |||||||||||||||    
T  2183685 gtatgagttcggggtgggtacatatatctccattacctctctcgtacccgtattttgaaatcggagaaaatccaaactcata 2183604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 247
Target Start/End: Original strand, 5700285 - 5700428
Alignment:
Q  104 agtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggata 203  Q
    ||||||||||||||| ||||| | ||| |||||||||| | |  ||| ||||||||||| ||||||||| |||  ||| |||||||||||| ||||| ||    
T  5700285 agtgaaatgatttagagtttcggtttcaatttatataaaaggggtaaaaaattaattttatacattcgggatggatttgggtatgggttcgaggtgggta 5700384  T
Q  204 cttatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
      ||||||  | |||||  |||| || | |||||||||||||||    
T  5700385 tctatatccccgttaccagtctcatacctgtgttttgaaatcgg 5700428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 9476178 - 9476065
Alignment:
Q  98 tgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||| |||||||| |||||| |||||   |||||||||||||  | |  |||||| |||||||| ||||||||| ||| |||| |||||||||||| ||    
T  9476178 tgtgtgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggatgggtttgggtatgggttcgagg 9476079  T
Q  198 tggatacttatatc 211  Q
    ||| || |||||||    
T  9476078 tgggtatttatatc 9476065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 29918530 - 29918645
Alignment:
Q  98 tgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||| ||||||||||||||| ||||  | |||||||||||||| |    ||||||||| |||||||||||| || | | ||||  |||||| |||||||    
T  29918530 tgtgtgagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattgattttttacatttgggacgggtttgtgtatggtttcgggg 29918629  T
Q  198 tggatacttatatctt 213  Q
    ||| ||| ||||||||    
T  29918630 tgggtacatatatctt 29918645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 264
Target Start/End: Original strand, 14155505 - 14155622
Alignment:
Q  148 taataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc-g 246  Q
    ||||||||| ||||| ||||||  | ||| |||| ||||||  || ||||||||||  |||||| || ||||||||||  || ||||||||||||||| |    
T  14155505 taataaattgattttctacatttaggatgggtttgggtatgaatttggggtggataaatatatcctcgttacccatcttatacccgtgttttgaaatcgg 14155604  T
Q  247 gagaaatccaaactcata 264  Q
    || ||| |||||||||||    
T  14155605 gaaaaacccaaactcata 14155622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 14186295 - 14186391
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcg 246  Q
    ||||||||||||| ||||||| | | | |||| ||||||||||| |||||  ||| ||||| | | ||||||||| | || ||||||||||||||||    
T  14186295 ataaattaattttctacattcaggacgggtttgggtatgggttcagggtgagtacctatatatccgttacccatcccatacccgtgttttgaaatcg 14186391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 39379695 - 39379596
Alignment:
Q  147 ataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcg 246  Q
    |||||||||| ||||  ||||||||| | ||||||  ||||| ||||||| ||| ||||| |||| ||||||||| || |||| ||||||||||| ||||    
T  39379695 ataataaattgatttactacattcgggacgagtttgagtatgagttcggg-tgggtacttttatcctcattacccgtcccgtacccgtgttttgagatcg 39379597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 45236040 - 45236135
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc 245  Q
    |||||||||||||||||||| || | | || | | |||||||||||||||| ||| |||||   |||||||| || | || |||||||||||||||    
T  45236040 ataaattaattttttacatttgggacgggtatggatatgggttcggggtgggtacctatatacccattacccgtcccatacccgtgttttgaaatc 45236135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 20399567 - 20399669
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| ||||||||| ||||||| | | |||| || ||||||||||||||| ||  |||||   | |||||| || | || |||||||||||||||||||    
T  20399567 ataaaataattttttgcattcgggacgggtttgggaatgggttcggggtgggtatctatatacccgttacccgtcccatacccgtgttttgaaatcggag 20399666  T
Q  250 aaa 252  Q
    |||    
T  20399667 aaa 20399669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 24870137 - 24870035
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | ||||||||||||| ||||||||| ||| |||||   | |||||| || | || ||||||||| ||||||| |    
T  24870137 ataaagtaattttttacatttgggacgggtttaggtatgggctcggggtgggtacctatatacccgttacccgtcacatacccgtgttttaaaatcgggg 24870038  T
Q  250 aaa 252  Q
    |||    
T  24870037 aaa 24870035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 30481581 - 30481545
Alignment:
Q  42 ggagaaaagagagtacttagagaagtgagtgtcgtct 78  Q
    |||||| |||||| |||||||||||||||||||||||    
T  30481581 ggagaagagagagaacttagagaagtgagtgtcgtct 30481545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 99 - 342
Target Start/End: Complemental strand, 17845556 - 17845318
Alignment:
Q  99 gtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaatttttt-acattcggaatgagtttaggtatgggttcgggg 197  Q
    |||| |||||||||||||||  ||   | |||||||||||||| | | |||||||||| ||||||| |||||||  | | |||| ||||||||||  |||    
T  17845556 gtgtgagtgaaatgatttaggtttggagtttctatttatataaaaaggataataaattgatttttttacattcgagacgggtttgggtatgggttaaggg 17845457  T
Q  198 tggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaatccaaactcataaccctatcaaagcggggaaactccgtcaattta 297  Q
    ||| ||||||||| | |||||||  |||| ||  ||||||||||||||| |||||     ||||| ||||| |||||||| |||||| ||||||||||||    
T  17845456 tgggtacttatatgtccattaccggtctcatactcgtgttttgaaatcgaagaaa-----actca-aacccaatcaaagcagggaaaatccgtcaattta 17845363  T
Q  298 ggtttggtttagaaggttactcacagatatgtgttttgttgccat 342  Q
     |||||||  ||| || ||| |||| ||||| | |||||||||||    
T  17845362 agtttggtacagacgggtacccacatatatgggctttgttgccat 17845318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 45256798 - 45256901
Alignment:
Q  149 aataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcgga 248  Q
    |||||| |||||||||||||| || | | ||||||||||||||||||||||| |||||||||   ||||| || |||| || |||||||||||||||||     
T  45256798 aataaagtaattttttacatttgggacgggtttaggtatgggttcggggtgggtacttatatacccattaaccgtctcatacccgtgttttgaaatcggg 45256897  T
Q  249 gaaa 252  Q
    ||||    
T  45256898 gaaa 45256901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 25210301 - 25210442
Alignment:
Q  98 tgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||| ||||||||||||||| ||||  | |||||||||||||| | |  ||| ||||| ||||| ||||||||| | | |||| |||||||||| ||||    
T  25210301 tgtgtgagtgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaattgattttctacattcgggaggggttttggtatgggtttgggg 25210400  T
Q  198 tggatacttatatcttcattacccatctcgtaaccgtgtttt 239  Q
    ||| ||| |||||| || |||||| || | || |||||||||    
T  25210401 tgggtacatatatcctcgttacccgtcccatacccgtgtttt 25210442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 245
Target Start/End: Original strand, 30696848 - 30696995
Alignment:
Q  98 tgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||| ||||| ||||||||| ||||    |||||||||||||| | |  ||||||||| |||||||||||| || ||  |||| |||||| ||||||||    
T  30696848 tgtgtgagtgacatgatttagggtttgaatttctatttatataaaatgggtaataaattgattttttacatttgggataggtttgggtatgagttcgggg 30696947  T
Q  198 tggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc 245  Q
    ||| ||| |||||||   |||||| ||||||| || |||||| |||||    
T  30696948 tgggtacatatatctctgttacccgtctcgtatccatgttttaaaatc 30696995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 242
Target Start/End: Original strand, 13531867 - 13532017
Alignment:
Q  92 tttgattgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggt 191  Q
    ||||||||||| ||||||||||||||| ||||  | |||||||||||||| | | |||||||||| ||||| |||||  ||   | ||||  || |||||    
T  13531867 tttgattgtgtgagtgaaatgatttagggtttgagtttctatttatataaaatggataataaattgattttctacatgtggggcgggtttgagtgtgggt 13531966  T
Q  192 tcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaa 242  Q
    |||||||| |||| |||||| || ||||| |||  ||| || |||||||||    
T  13531967 tcggggtgaatacatatatcctcgttacctatccagtatccatgttttgaa 13532017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 252
Target Start/End: Complemental strand, 34458948 - 34458844
Alignment:
Q  147 ataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcg 246  Q
    |||||||||| |||||||||||||| || |||||| | || | |||||||  |||||| |||||||||||||| | |  |||| |||||||||||||| |    
T  34458948 ataataaatttattttttacattcg-aacgagtttggataggagttcgggacggatacatatatcttcattactcgttccgtacccgtgttttgaaattg 34458850  T
Q  247 gagaaa 252  Q
    ||||||    
T  34458849 gagaaa 34458844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 13705474 - 13705372
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||| ||||| || | | ||||||||||||||||||||||| ||| |||||   | |||||  |||| || ||||||||||||||||| |    
T  13705474 ataaagtaatttttcacatttgggacgggtttaggtatgggttcggggtgggtacctatatacccgttacctgtctcatacccgtgttttgaaatcgggg 13705375  T
Q  250 aaa 252  Q
    |||    
T  13705374 aaa 13705372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 37999459 - 37999561
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | |||| |||||| ||||||||||| |||||||||   | |||||| |||| || ||||||||||| ||||| |    
T  37999459 ataaagtaattttttacatttgggacgggtttgggtatgagttcggggtgggtacttatatacccgttacccgtctcatacccgtgttttgagatcgggg 37999558  T
Q  250 aaa 252  Q
    |||    
T  37999559 aaa 37999561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 35965310 - 35965412
Alignment:
Q  149 aataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcgga 248  Q
    |||||||| ||||| ||||||||| | | |||| ||||||||||||| |||| ||| | ||||  |||||| |||| | || |||||||||||||||||     
T  35965310 aataaattgattttctacattcgggacgggtttgggtatgggttcggagtgggtacatgtatccccattacacatc-catacccgtgttttgaaatcggg 35965408  T
Q  249 gaaa 252  Q
    ||||    
T  35965409 gaaa 35965412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 3547177 - 3547239
Alignment:
Q  185 tatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
    |||||||||||||||| ||| ||||||| | |||||| || |||| |||| ||||||||||||    
T  3547177 tatgggttcggggtgggtacatatatctccgttacccgtcccgtacccgtattttgaaatcgg 3547239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 9632362 - 9632464
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| || ||||||||||| || | | |||| |||||||||||||||||||||| |||||   |||||||| || | || |||||||| || ||||| |    
T  9632362 ataaagtagttttttacatttgggacgggtttgggtatgggttcggggtggatacctatatacccattacccgtcccatacccgtgtttcgagatcgggg 9632461  T
Q  250 aaa 252  Q
    |||    
T  9632462 aaa 9632464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 10920621 - 10920681
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | |  ||| |||||||||||||||||||||| |||||    
T  10920621 ataaagtaattttttacatttgggacggatttgggtatgggttcggggtggatacctatat 10920681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 42 - 164
Target Start/End: Complemental strand, 6557947 - 6557825
Alignment:
Q  42 ggagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataa 141  Q
    |||||| |||||| ||||||||||||||||||| |||||| |||  | ||||||||||||| ||||||||||||||| ||||  |||||||||| ||| |    
T  6557947 ggagaagagagagaacttagagaagtgagtgtcatctgaaagactgagactttgattgtgtgagtgaaatgatttagagtttgagattctatttctatga 6557848  T
Q  142 tacgtataataaattaatttttt 164  Q
     | | |||||||| | |||||||    
T  6557847 aaaggataataaactgatttttt 6557825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 26622931 - 26623026
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc 245  Q
    ||||| ||||||||| |||||| || |||||| |||||||||||||||||| |||||||||   ||||||||||| | || |||||||||||||||    
T  26622931 ataaaataattttttgcattcgaaacgagtttgggtatgggttcggggtgggtacttatatacccattacccatcccatacccgtgttttgaaatc 26623026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 12980385 - 12980465
Alignment:
Q  178 gtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaatccaaa 258  Q
    |||| |||||||||||||||||| |||||||||   |||||||| || | || ||||||||||||||||| |||| |||||    
T  12980385 gtttgggtatgggttcggggtgggtacttatatacccattacccgtcccatacccgtgttttgaaatcggggaaaaccaaa 12980465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 247
Target Start/End: Complemental strand, 23475423 - 23475279
Alignment:
Q  104 agtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaatttttt-acattcggaatgagtttaggtatgggttcggggtggat 202  Q
    ||||||||||||||| ||||  | || |||||||| || |||  || |||||| ||||||| |||||||| | | |||| ||||||||||||  |||| |    
T  23475423 agtgaaatgatttagagtttgggtttttatttatacaaaacgggtagtaaattgatttttttacattcgggacgggtttgggtatgggttcgaagtgggt 23475324  T
Q  203 acttatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
    || ||||||  ||||||||||| |  | |||||||||||||||||    
T  23475323 acatatatccccattacccatcccaaacccgtgttttgaaatcgg 23475279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 31345400 - 31345528
Alignment:
Q  44 agaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataata 143  Q
    ||||||||||| | |  || ||||||||||| ||| ||||||  | ||||||||||||| ||||||||||| ||| ||||  | |||||||||||||| |    
T  31345400 agaaaagagagaattatgataagtgagtgtcatctaaatgactgagactttgattgtgtgagtgaaatgatatagagtttgagtttctatttatataaaa 31345499  T
Q  144 cgtataataaattaattttttacattcgg 172  Q
        || |||||| |||||||||||||||    
T  31345500 atggtagtaaattgattttttacattcgg 31345528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 102 - 252
Target Start/End: Original strand, 29292634 - 29292786
Alignment:
Q  102 ttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtgga 201  Q
    |||||||||| |||||| ||||    |||| ||||||||| | |  || |||||| ||||| ||||||||  | |||||||||||||||||  ||||||     
T  29292634 ttagtgaaataatttagggtttggatttctctttatataaaaggggtagtaaattgattttctacattcgagacgagtttaggtatgggtttagggtggg 29292733  T
Q  202 --tacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
      ||| ||||||    |||||||||||||| ||||||||||||||||| ||||    
T  29292734 cgtacctatatccatgttacccatctcgtacccgtgttttgaaatcggggaaa 29292786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 38152867 - 38152927
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | | ||||||||||||||||||||||| ||| |||||    
T  38152867 ataaaataattttttacatttgggacgggtttaggtatgggttcggggtgggtacctatat 38152927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 45380096 - 45380184
Alignment:
Q  159 ttttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
    ||||||||||| || | ||||||||||||||||||||||||| ||| |||||   | |||||| || | || |||| ||||||||||||    
T  45380096 ttttttacatttgggacgagtttaggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtattttgaaatcgg 45380184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 11472871 - 11472813
Alignment:
Q  104 agtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaatttt 162  Q
    ||||||||||||||| ||||  | |||||||||||||| | |||||||||||| |||||    
T  11472871 agtgaaatgatttagggttttggtttctatttatataaaaggtataataaattgatttt 11472813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 25980030 - 25979928
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| |||| |  ||| |||||| ||| ||||||| ||| ||||| | | |||||| |||| || | ||||||||||||||| |    
T  25980030 ataaaataattttttacatttggaaaggatttgggtatgagtttggggtgggtacatatatatccgttacccgtctcatacctgtgttttgaaatcgggg 25979931  T
Q  250 aaa 252  Q
    |||    
T  25979930 aaa 25979928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 41103636 - 41103738
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| ||||||||||||||  | | | ||||| ||||||||||||||||| |||||||||   | ||| || || | || ||||||||||||||||| |    
T  41103636 ataaaataattttttacatttaggacgggtttatgtatgggttcggggtgggtacttatatacccgttaaccgtcccatacccgtgttttgaaatcgggg 41103735  T
Q  250 aaa 252  Q
    |||    
T  41103736 aaa 41103738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 43507425 - 43507527
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | |||| ||||||||||||| |||||| | | |||||   | |||||| |||| || || |||||||||||||| |    
T  43507425 ataaaataattttttacatttgggacgagtataggtatgggttcagggtgggtgcctatatacccgttacccgtctcatacccatgttttgaaatcgggg 43507524  T
Q  250 aaa 252  Q
    |||    
T  43507525 aaa 43507527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 23533707 - 23533615
Alignment:
Q  159 ttttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||||||||||||| | |||||| ||||||||||||  |||| ||| ||||||  ||||||||||| | || |||| |||| ||||||| ||||    
T  23533707 ttttttacattcgggacgagtttgggtatgggttcgaagtgggtacatatatc-ccattacccatcgcatacccgtattttcaaatcggggaaa 23533615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 6557784 - 6557740
Alignment:
Q  204 cttatatcttcattacccatctcgtaaccgtgttttgaaatcgga 248  Q
    |||||||||||||||| | ||||||| ||||||||| ||||||||    
T  6557784 cttatatcttcattactcgtctcgtacccgtgtttttaaatcgga 6557740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 16866149 - 16866209
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| ||| |||||    
T  16866149 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatat 16866209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 42 - 252
Target Start/End: Original strand, 42907760 - 42907969
Alignment:
Q  42 ggagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataa 141  Q
    |||||||||| || |||  || ||||| ||||| |||||| ||| || ||| | | ||| | ||||||||||||||| ||||  | ||||||||||||||    
T  42907760 ggagaaaagatagaactatgataagtgtgtgtcatctgaaagactaagactctaactgtatgagtgaaatgatttagggtttgagtttctatttatataa 42907859  T
Q  142 tacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttga 241  Q
     | |  || |||||| ||||| ||||||||| | |||||| |||||||| ||||||||| ||| ||||||  |||||| | || |||| |||||||||||    
T  42907860 aa-gagtagtaaattgattttctacattcgggacgagtttgggtatgggctcggggtgggtacctatatccccattactcgtcccgtatccgtgttttga 42907958  T
Q  242 aatcggagaaa 252  Q
    | |||||||||    
T  42907959 attcggagaaa 42907969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 252
Target Start/End: Complemental strand, 33516295 - 33516083
Alignment:
Q  42 ggagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattg-tgttagtgaaatgatttagtgtttctgattctatttatata 140  Q
    ||||||||||||| | |  || ||||||||||| |||||| |||||| ||| | |  | ||| ||||||||||||||| ||||  | || ||||||||||    
T  33516295 ggagaaaagagagaattatgataagtgagtgtcatctgaaagaccaagactctaacgggtgtgagtgaaatgatttagggtttgagtttttatttatata 33516196  T
Q  141 atacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtg-tttt 239  Q
    | | |  ||||| ||| |||||||||||| |  | | |||| ||||| |||||||||||| ||||||||||    |||||||||||||| ||||| ||||    
T  33516195 aaaggggtaatacattgattttttacatttgagacgggtttgggtataggttcggggtgggtacttatatccctgttacccatctcgtacccgtgttttt 33516096  T
Q  240 gaaatcggagaaa 252  Q
     ||||||||||||    
T  33516095 taaatcggagaaa 33516083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 1866637 - 1866566
Alignment:
Q  176 gagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
    |||||| |||||||||||||||||||||| ||||||  |||||||| ||||||| |||| ||||||||||||    
T  1866637 gagtttgggtatgggttcggggtggatacatatatccgcattacccgtctcgtacccgtattttgaaatcgg 1866566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 43 - 246
Target Start/End: Complemental strand, 21714196 - 21713993
Alignment:
Q  43 gagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataat 142  Q
    |||||||||||| |||  |||||||||||||| | |||  |||  | ||| | ||||||| ||||||||||||||| ||||  | ||||||||||||||     
T  21714196 gagaaaagagagaactatgagaagtgagtgtcatttgagagactgagactctaattgtgtaagtgaaatgatttagggtttgagtttctatttatataaa 21714097  T
Q  143 acgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaa 242  Q
    |    ||||||||||||||| |||||| |  | ||||||||||||| |||  |||||| ||| |||| ||  |||||||||| ||||  | |||||| ||    
T  21714096 agaggtaataaattaattttctacatttgagacgagtttaggtatgagtttagggtgggtacatatacctcgattacccatcacgtactcatgttttaaa 21713997  T
Q  243 atcg 246  Q
    ||||    
T  21713996 atcg 21713993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 306
Target Start/End: Complemental strand, 19883169 - 19883008
Alignment:
Q  151 taaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag- 249  Q
    |||||| ||||| ||||||||| | ||||||  |||| |||||||||||||||| ||||||  | |||||| || |||| ||||||||| ||||||| |     
T  19883169 taaattgattttatacattcgggacgagtttgtgtatcggttcggggtggatacctatatccccgttacccttcccgtatccgtgttttaaaatcgggga 19883070  T
Q  250 aaatccaaactcat-----aaccctatcaaagcggggaaactccgtcaatttaggtttggtt 306  Q
    ||| ||||||||||     ||||| ||||||||||| |||  ||||||| || |||||||||    
T  19883069 aaacccaaactcatactcaaacccaatcaaagcgggaaaaacccgtcaaattgggtttggtt 19883008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 264
Target Start/End: Complemental strand, 21956971 - 21956813
Alignment:
Q  106 tgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatact 205  Q
    ||||||||||||| ||||  | || ||||||||||| | |  ||||||||| ||||| |||||||| || |||||| ||||||||||||||||||  ||     
T  21956971 tgaaatgatttagggtttgggtttttatttatataaaaggg-taataaattgattttctacattcgtaacgagtttgggtatgggttcggggtgggcacc 21956873  T
Q  206 tatatcttcattacccatctcgtaaccgtgttttgaaatcgg-agaaatccaaactcata 264  Q
    ||||||  | |||| |||  |||| ||||||||| ||||||| | ||| |||||||||||    
T  21956872 tatatccccgttactcattccgtacccgtgttttaaaatcggaaaaaacccaaactcata 21956813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 4741385 - 4741269
Alignment:
Q  94 tgattgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttc 193  Q
    ||||||||| || | || ||||||| ||||  | |||||||||||||| | | |||||||||| |||| | |||||||||| | ||||  ||||||||||    
T  4741385 tgattgtgtgagaggaacgatttagggtttgagtttctatttatataaaatggataataaattgatttat-acattcggaacgggtttttgtatgggttc 4741287  T
Q  194 ggggtggatacttatatc 211  Q
    ||||||| ||||||||||    
T  4741286 ggggtgggtacttatatc 4741269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 245
Target Start/End: Complemental strand, 25298992 - 25298852
Alignment:
Q  104 agtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggata 203  Q
    ||||||||||||||| ||||  | ||||||||||| || | |  | ||||||| |||||  ||||| || | | |||| ||||||||||||||||||| |    
T  25298992 agtgaaatgatttagagtttgag-ttctatttataaaaaaggggtgataaattgattttcaacatttggtacgggtttgggtatgggttcggggtggaca 25298894  T
Q  204 cttatatcttcattacccatctcgtaaccgtgttttgaaatc 245  Q
      ||||||  ||||||||||| |||| |||||||||||||||    
T  25298893 gctatatccccattacccatcccgtacccgtgttttgaaatc 25298852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 170
Target Start/End: Complemental strand, 8844026 - 8843898
Alignment:
Q  42 ggagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataa 141  Q
    ||||||||||||| |||  || ||||||||||| |||||| | | || ||| ||| ||||| |||||||||||||||  |||  | |||||||||||| |    
T  8844026 ggagaaaagagagaactatgataagtgagtgtcatctgaaagtctaagactgtgactgtgtgagtgaaatgatttaggatttaagtttctatttatatga 8843927  T
Q  142 tacgtataataaattaattttttacattc 170  Q
     | |  ||||||||||||||| |||||||    
T  8843926 aaggggtaataaattaattttctacattc 8843898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 170
Target Start/End: Complemental strand, 8856990 - 8856862
Alignment:
Q  42 ggagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataa 141  Q
    ||||||||||||| |||  || ||||||||||| |||||| | | || ||| ||| ||||| |||||||||||||||  |||  | |||||||||||| |    
T  8856990 ggagaaaagagagaactatgataagtgagtgtcatctgaaagtctaagactgtgactgtgtgagtgaaatgatttaggatttaagtttctatttatatga 8856891  T
Q  142 tacgtataataaattaattttttacattc 170  Q
     | |  ||||||||||||||| |||||||    
T  8856890 aaggggtaataaattaattttctacattc 8856862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 14606013 - 14605937
Alignment:
Q  176 gagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||||| |||||||||||||||||| ||| ||||||    |||||| ||||||| |||| |||||||||||||||||    
T  14606013 gagtttgggtatgggttcggggtgggtacatatatccctgttacccgtctcgtacccgtattttgaaatcggagaaa 14605937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 24475036 - 24474965
Alignment:
Q  42 ggagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatga 113  Q
    |||||| |||||| ||||||||||||||||||| |||||| |||  | ||||||||||| | ||||||||||    
T  24475036 ggagaagagagagaacttagagaagtgagtgtcatctgaaagactgagactttgattgtatgagtgaaatga 24474965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 16575091 - 16575189
Alignment:
Q  148 taataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcg 246  Q
    ||||||||||||||||||||||    | |||||| ||||| ||||||| |||| |||||||||| || ||| ||||| |||| ||| ||||| ||||||    
T  16575091 taataaattaattttttacatttaagacgagtttgggtataggttcggagtgggtacttatatcctcgttatccatcccgtacccgcgttttaaaatcg 16575189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 293
Target Start/End: Original strand, 29527807 - 29527930
Alignment:
Q  164 tacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaatccaaactcat 263  Q
    ||||||||||  | |||| |||||||||||||||||| ||| ||||||  | |||||| || |||| |||| |||||||||||| |||| || |          
T  29527807 tacattcggatagggtttgggtatgggttcggggtgggtacatatatccccgttacccgtcacgtacccgtattttgaaatcggggaaaaccca------ 29527900  T
Q  264 aaccctatcaaagcggggaaactccgtcaa 293  Q
    |||||||||||||||||||||  |||||||    
T  29527901 aaccctatcaaagcggggaaaacccgtcaa 29527930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 36919052 - 36919165
Alignment:
Q  98 tgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||| ||||||||||||||| ||||  | |||||||||||||| |    ||||||| | ||||| ||||| ||||| |||||| ||||||||||  ||     
T  36919052 tgtgtgagtgaaatgatttagagtttgagtttctatttatataaaagtggtaataaactgattttctacatccggaacgagtttgggtatgggttaagga 36919151  T
Q  198 tggatacttatatc 211  Q
    ||||||| ||||||    
T  36919152 tggatacctatatc 36919165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 23927756 - 23927694
Alignment:
Q  148 taataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatc 211  Q
    ||||||||||||||| || |||||  |||||||| |||| ||||||||||||||||| ||||||    
T  23927756 taataaattaattttcta-attcgagatgagtttgggtaggggttcggggtggatacctatatc 23927694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 33916134 - 33916233
Alignment:
Q  147 ataataaattaa-ttttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc 245  Q
    |||||||||||| ||||||||||| || |||||||| |||||| |||  |||| | ||||||||||   |||| || ||||||| ||||| |||||||||    
T  33916134 ataataaattaaattttttacatttgggatgagtttgggtatgagttttgggtaggtacttatatccctattatccgtctcgtatccgtgatttgaaatc 33916233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 21544588 - 21544670
Alignment:
Q  178 gtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc-ggagaaatccaaac 259  Q
    |||| |||||||||||||||||| ||| ||||||  |||||||  || |||| |||| |||||||||| ||| ||||||||||    
T  21544588 gtttgggtatgggttcggggtgggtacatatatccccattacctgtcccgtacccgtattttgaaatcgggaaaaatccaaac 21544670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 31752437 - 31752539
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | || | ||||||||||||||||||  || |||||  || |||| | |||| || ||||||||||||||||| |    
T  31752437 ataaagtaattttttacatttgggacgggtatgggtatgggttcggggtgggaacctatatactcgttactcgtctcatacccgtgttttgaaatcgggg 31752536  T
Q  250 aaa 252  Q
    |||    
T  31752537 aaa 31752539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 53906413 - 53906359
Alignment:
Q  156 taattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    |||||||||||||| || | |||||||| |||||||||||||||| ||| |||||    
T  53906413 taattttttacatttgggacgagtttagatatgggttcggggtgggtacctatat 53906359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 6382377 - 6382284
Alignment:
Q  159 ttttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||||||||||| || | | |||| |||||||||||||||||| ||| |||||   | |||||| || | || ||||||||||| ||||||||||    
T  6382377 ttttttacatttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggagaaa 6382284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 221
Target Start/End: Complemental strand, 12505738 - 12505573
Alignment:
Q  56 acttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaat 155  Q
    ||||||||||| ||  ||| |||||| |||  | ||||||||||||  | |||||||||||| |||||  | |||||||||||||| | |   |||||||    
T  12505738 acttagagaagcgaaggtcatctgaaagactgagactttgattgtgcgaatgaaatgatttaatgtttaagtttctatttatataaaaggggaaataaat 12505639  T
Q  156 taattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattaccc 221  Q
    | || |||||| ||| | | | |||| |||||| |||| |||||| |||| |||||  ||||||||    
T  12505638 tgatgttttaccttcaggacgggtttgggtatgagttcagggtgggtactaatatccccattaccc 12505573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 15733600 - 15733544
Alignment:
Q  190 gttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcg 246  Q
    ||||||||||| ||| ||||||| | |||||| ||||||| |||| |||||||||||    
T  15733600 gttcggggtgggtacatatatctccgttacccgtctcgtacccgtattttgaaatcg 15733544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 47550467 - 47550407
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| ||| |||||    
T  47550467 ataaaataattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatat 47550407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 48459462 - 48459522
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || ||| || | |||||||||||||||||| ||| |||||    
T  48459462 ataaagtaattttttacatttgggatgggtatgggtatgggttcggggtgggtacctatat 48459522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 105 - 262
Target Start/End: Complemental strand, 48125841 - 48125683
Alignment:
Q  105 gtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatac 204  Q
    ||||||| |||||| ||||  | |||||||||||||| |    || |||||| ||||| ||||||||  | |||||| ||||||||||||||||||||||    
T  48125841 gtgaaataatttagagtttgagtttctatttatataaaagcggtagtaaattgattttctacattcgcgacgagtttgggtatgggttcggggtggatac 48125742  T
Q  205 ttatatcttcattacccatctcgtaaccgtgttttgaaatc-ggagaaatccaaactca 262  Q
     |||||| || |||||| || |||| ||||||||| ||||| ||| |||||||||||||    
T  48125741 ctatatcctcgttacccgtcccgtacccgtgttttaaaatcaggaaaaatccaaactca 48125683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 264
Target Start/End: Original strand, 13798212 - 13798329
Alignment:
Q  148 taataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc-g 246  Q
    ||||||||| ||||| ||||||  | ||| |||||||||||  || ||||||||||  |||||| || ||||||||||| || ||||||||||||||| |    
T  13798212 taataaattgattttctacatttaggatgggtttaggtatgaatttggggtggataaatatatcctcgttacccatctcatacccgtgttttgaaatcgg 13798311  T
Q  247 gagaaatccaaactcata 264  Q
    || ||| |||||||||||    
T  13798312 gaaaaacccaaactcata 13798329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 39219182 - 39219284
Alignment:
Q  98 tgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||| || |||||||||||| ||||  | |||||||||||||| |    ||||||||||||||| ||||||  ||| |||||| |||||||||||||||    
T  39219182 tgtgtgagcgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttctacatttagaacgagtttgggtatgggttcgggg 39219281  T
Q  198 tgg 200  Q
    |||    
T  39219282 tgg 39219284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 247
Target Start/End: Complemental strand, 42729109 - 42728960
Alignment:
Q  98 tgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcgggg 197  Q
    ||||| |||||||||||||||||| |  | |||||||||||||| | | || ||||||| ||||| ||||||| ||| | |||| |||||| ||||||||    
T  42729109 tgtgtgagtgaaatgatttagtgtataagtttctatttatataaaagggatgataaatttattttctacattcagaacgtgtttgggtatgagttcgggg 42729010  T
Q  198 tggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcgg 247  Q
    | | |||  |||||  ||| || | ||| ||| || ||||||||||||||    
T  42729009 tagttacccatatccccatcactcgtcttgtacccatgttttgaaatcgg 42728960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 9983003 - 9982888
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| ||||||| | ||||||| ||| |||| |||||||||||||||||| ||| |||||  || ||||||||| | |  |||||||||||||| || |    
T  9983003 ataaagtaattttctgcattcgggatgggtttgggtatgggttcggggtgggtacctatatactcgttacccatcccattcccgtgttttgaaattgggg 9982904  T
Q  250 -aaatccaaactcata 264  Q
     |||| ||||||||||    
T  9982903 aaaattcaaactcata 9982888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 45866298 - 45866196
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || ||| || | |||||| ||| ||||||| ||| |||||  ||||||||  |||| || ||||||||||||||||| |    
T  45866298 ataaagtaattttttacatttgggatgggtatgggtatgagtttggggtgggtacctatatactcattacctgtctcatacccgtgttttgaaatcgggg 45866199  T
Q  250 aaa 252  Q
    |||    
T  45866198 aaa 45866196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 10105240 - 10105296
Alignment:
Q  148 taataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatac 204  Q
    ||||||| |||||||||||||||| || |||||| |||||| |||||| ||||||||    
T  10105240 taataaagtaattttttacattcgaaacgagtttgggtatgagttcggagtggatac 10105296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 13692512 - 13692624
Alignment:
Q  42 ggagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataa 141  Q
    ||||||||||||| |||   | |||||||||||||||||| ||  || ||| | |||||||  |||||||||||||| ||||  | ||||||||||||||    
T  13692512 ggagaaaagagagaactataataagtgagtgtcgtctgaaagagtaagactctaattgtgtgggtgaaatgatttagggttttggtttctatttatataa 13692611  T
Q  142 tacgtataataaa 154  Q
     | | ||||||||    
T  13692612 aagggataataaa 13692624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 42439783 - 42439723
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || |||||||| | |||||||||||||||| ||| |||||    
T  42439783 ataaagtaattttttacatttgggatgagtttggatatgggttcggggtgggtacctatat 42439723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 347
Target Start/End: Original strand, 16903508 - 16903702
Alignment:
Q  159 ttttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaa-tcggagaaatccaa 257  Q
    |||||||||||||| | | |||| |||||| ||||||||||| ||| ||||||  ||||||| ||| ||||  |||||||| ||| | ||| ||||| ||    
T  16903508 ttttttacattcgggacgggtttgggtatgagttcggggtgggtacctatatccccattacctatcccgtactcgtgttttaaaattgggaaaaatctaa 16903607  T
Q  258 actcat-----aaccctatcaaagcggggaaactccgtcaatttaggtttggtttagaaggttactcacagatatgtgttttgttgccatgtcta 347  Q
    || |||     ||||| ||||||| | ||||| |||||||| || | |||||||   | |  |||||| || |||||||||||||||||| ||||    
T  16903608 acccatgcccaaacccaatcaaagtgaggaaaatccgtcaacttggatttggttcgaatgagtactcataggtatgtgttttgttgccatatcta 16903702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 23058470 - 23058544
Alignment:
Q  178 gtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||| |||||||||||||||||| ||| ||||||  | |||||| |||||||  ||  |||||||||||||||||    
T  23058470 gtttgggtatgggttcggggtgggtacctatatccccgttacccgtctcgtactcgcattttgaaatcggagaaa 23058544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 49250886 - 49250784
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| || ||||||||||| || | | |||| |||||||||||| ||||||||| |||||   |||||||| || | || ||||||||||| ||||| |    
T  49250886 ataaagtagttttttacatttgggacgggtttgggtatgggttcgaggtggatacctatatacccattacccgtcccatacccgtgttttgagatcgggg 49250787  T
Q  250 aaa 252  Q
    |||    
T  49250786 aaa 49250784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 33293675 - 33293590
Alignment:
Q  108 aaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttc 193  Q
    ||||||||||| ||||  | ||||||| |||||| | |  || |||||| ||||| ||||||||||| |||||| |||||||||||    
T  33293675 aaatgatttagggtttgagtttctattgatataaaatgggtactaaattgattttctacattcggaacgagtttgggtatgggttc 33293590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 34085217 - 34085326
Alignment:
Q  156 taattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc-ggagaaatc 254  Q
    ||||||||||||||  | | |||| | |||||||||||||||||| ||| |||| |  | ||||||||| | ||  |||||||||||||| ||| ||| |    
T  34085217 taattttttacatttaggacgagtatgggtatgggttcggggtgggtacatataaccccgttacccatcccatactcgtgttttgaaatcgggaaaaacc 34085316  T
Q  255 caaactcata 264  Q
    ||||||||||    
T  34085317 caaactcata 34085326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 348
Target Start/End: Complemental strand, 47644994 - 47644781
Alignment:
Q  128 ttctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcg 227  Q
    |||||||||||||| | | ||||||||||| | |||||||||||| | |||| | | |||| ||||||||| | ||||| ||||  ||||| || || ||    
T  47644994 ttctatttatataaaagggataataaattattattttacattcgggacgagtatggatatgagttcggggtaggtacttctatc-ccattatccgtcccg 47644896  T
Q  228 taaccgtgttttgaaatcggagaaatccaaactcataaccctatcaaagcggggaaactccgtcaatttaggtttggtttagaaggttactcacagatat 327  Q
    || | ||||||||| ||||| |||| || |      ||||  ||||||||| | |||  ||||||||||||||| ||||  |  || ||| |||| || |    
T  47644895 tacctgtgttttgagatcggggaaaaccca------aacctaatcaaagcgagaaaaacccgtcaatttaggttcggttcggtcgggtacccacaaattt 47644802  T
Q  328 gtgttttgttgccatgtctag 348  Q
    | |||||||||||||||||||    
T  47644801 gagttttgttgccatgtctag 47644781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 241
Target Start/End: Complemental strand, 48576289 - 48576140
Alignment:
Q  92 tttgattgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggt 191  Q
    |||||| |||| ||||||||||||||| ||||  |||| |||||||| || | | || ||||||| ||||| | ||||||| |  ||||||||  |||||    
T  48576289 tttgatcgtgtaagtgaaatgatttagggtttgagattttatttatacaaaaaggattataaattgattttcttcattcgggacaagtttaggcgtgggt 48576190  T
Q  192 tcggggtggatacttatatcttcattacccatctcgtaaccgtgttttga 241  Q
    || | ||||  |||| ||||  |||||||| |||| || | |||||||||    
T  48576189 tcagagtgggcacttttatccccattacccgtctcatacctgtgttttga 48576140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 9681886 - 9681791
Alignment:
Q  156 taattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||||||| ||||||||  |||  ||| | |||||||||||| ||  ||| |||||| |||||| ||||| |||| || |||||||||||||||||||    
T  9681886 taattttctacattcgagatggatttggatatgggttcggg-tgagtacatatatcatcattatccatcacgtacccttgttttgaaatcggagaaa 9681791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 23490884 - 23490824
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    |||||||| ||||||||||| || | | |||| |||||||||||||||||| ||| |||||    
T  23490884 ataaattagttttttacatttgggacgggttttggtatgggttcggggtgggtacctatat 23490824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 29936392 - 29936452
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| ||| |||||    
T  29936392 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatat 29936452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 20855 - 20740
Alignment:
Q  147 ataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc- 245  Q
    |||||||||| ||||||||||||||||| | ||||  ||||||||||| |||||||| |||||||  |||||||| |||| ||  || |||||||||||     
T  20855 ataataaattgattttttacattcggaacgggtttgagtatgggttcgaggtggatatttatatccccattacccgtctcatactcgagttttgaaatcg 20756  T
Q  246 ggagaaatccaaactc 261  Q
    ||| ||||||||||||    
T  20755 ggaaaaatccaaactc 20740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 2681205 - 2681293
Alignment:
Q  164 tacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||||||||||  | |||| ||||||||||||||||||||||| |||||  ||||||||||| |||| | || |||||||||||| ||||    
T  2681205 tacattcggatagggtttgggtatgggttcggggtggatactcatatccccattacccatcccgtacctgtattttgaaatcggggaaa 2681293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 23045077 - 23045003
Alignment:
Q  178 gtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||| |||||||||||||||||| ||| ||||||| | ||||||||| |||| |||| |||||||||||| ||||    
T  23045077 gttttggtatgggttcggggtgggtacatatatctccgttacccatcccgtacccgtattttgaaatcggggaaa 23045003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 106 - 264
Target Start/End: Original strand, 29664902 - 29665059
Alignment:
Q  106 tgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatact 205  Q
    ||||||||||||| ||||  | ||||||||| |||| | |  || |||||| ||||| ||||||||| | | |||| |||||| |||||  |||| |||     
T  29664902 tgaaatgatttagagtttgagtttctatttaaataaaaggggtagtaaattgattttgtacattcgggacgggtttgggtatgagttcgaagtgggtacc 29665001  T
Q  206 tatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaatccaaactcata 264  Q
    ||||||  | |||||||||  ||| ||||||||||||||||||| || |||||||||||    
T  29665002 tatatccccgttacccatcatgtacccgtgttttgaaatcggag-aacccaaactcata 29665059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 4920801 - 4920903
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||||||| |||||   | |||||| || | || ||||||||||| ||||| |    
T  4920801 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtggatacctatatacccgttacccgtcccatacccgtgttttgagatcgggg 4920900  T
Q  250 aaa 252  Q
    |||    
T  4920901 aaa 4920903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 7350563 - 7350450
Alignment:
Q  108 aaatgatttagtgtttctgatt-ctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatactt 206  Q
    ||||||||||| ||||| |||| |||||||||||| |   |||||||||||||||| |||||| |  | | ||||| ||||||||||||||||||| | |    
T  7350563 aaatgatttagggtttc-gattactatttatataaaagcgataataaattaattttctacatttgagacgggtttaagtatgggttcggggtggatgcct 7350465  T
Q  207 atatcttcattaccc 221  Q
    |||||  ||||||||    
T  7350464 atatccccattaccc 7350450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 252
Target Start/End: Original strand, 6810078 - 6810235
Alignment:
Q  95 gattgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcg 194  Q
    |||||||| |||||||| |||||  ||||  | ||||||| |||||| | |   |||||||| |||||   ||||||| ||| |||| ||||||||||||    
T  6810078 gattgtgtgagtgaaatcatttaaggtttgggtttctattgatataaaaggggcaataaattgattttcaccattcgggatgggtttgggtatgggttcg 6810177  T
Q  195 gggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||||  |||||||||| || |||||| |  |||| ||||||| | ||||||| ||||    
T  6810178 gggtgagtacttatatcctcgttacccgttccgtacccgtgttctaaaatcggggaaa 6810235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 306
Target Start/End: Complemental strand, 16311429 - 16311245
Alignment:
Q  128 ttctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcg 227  Q
    |||||||||||||| | | |||||||||| |||||  |||||||  |   ||||   |||||||||||||||| ||| ||||||    ||| || |||||    
T  16311429 ttctatttatataaaagggataataaattgattttcaacattcgagacaggtttgaatatgggttcggggtgggtacctatatccctgttatccgtctcg 16311330  T
Q  228 taaccgtgttttgaaatcggagaaatc-caaactcata-----accctatcaaagcggggaaactccgtcaatttaggtttggtt 306  Q
    ||  ||||||||||||||||| ||| | ||||||||||     |||| ||||||||||| |||  ||||||| ||||||||||||    
T  16311329 tactcgtgttttgaaatcggaaaaaactcaaactcatatccaaacccaatcaaagcgggaaaaaaccgtcaaattaggtttggtt 16311245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 40187772 - 40187677
Alignment:
Q  148 taataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaat 244  Q
    ||||||||||||||| || |||||| | |||||| |||||| ||| ||| || |||| ||||||| | |||||| ||||| | ||||||||||||||    
T  40187772 taataaattaattttctatattcgggacgagtttgggtatgagtttggg-tgaatacctatatctccgttacccgtctcgcacccgtgttttgaaat 40187677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 12712643 - 12712569
Alignment:
Q  178 gtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||| |||||||||||| ||||| ||| ||||||| | ||| || || |||| |||| |||||||||||||||||    
T  12712643 gtttgggtatgggttcgaggtgggtacatatatctccgttatccgtcccgtacccgtattttgaaatcggagaaa 12712569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 28569102 - 28569020
Alignment:
Q  183 ggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag-aaatccaaactcata 264  Q
    |||||||||||||||||| ||| ||||||  | |||||| || |||| |||  |||||||||||| | |||||||||||||||    
T  28569102 ggtatgggttcggggtgggtacctatatccccgttacccgtcccgtacccgcattttgaaatcggggaaaatccaaactcata 28569020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 347
Target Start/End: Original strand, 39422402 - 39422524
Alignment:
Q  231 ccgtgttttgaaatcg-gagaaatccaaactcata-----accctatcaaagcggggaaactccgtcaatttaggtttggtttagaaggttactcacaga 324  Q
    |||||||||||||||| || ||| |||||||||||     |||| |||||||||||||||  | |||||||| ||| |||||  |  |||||| |||||     
T  39422402 ccgtgttttgaaatcgagaaaaacccaaactcatatccaaacccaatcaaagcggggaaaacctgtcaatttgggtgtggttcgggcggttacccacagg 39422501  T
Q  325 tatgtgttttgttgccatgtcta 347  Q
    |||| | ||||||||||||||||    
T  39422502 tatgagctttgttgccatgtcta 39422524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 12457436 - 12457537
Alignment:
Q  94 tgattgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttc 193  Q
    ||||||||| |||||||||||||||  |||  | |||||||||||| | | |  ||||||||| ||||| ||||||||| | | |||| |||||| ||||    
T  12457436 tgattgtgtgagtgaaatgatttagactttaggtttctatttatattaaaggggtaataaattgattttctacattcgggacgggtttgggtatgagttc 12457535  T
Q  194 gg 195  Q
    ||    
T  12457536 gg 12457537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 264
Target Start/End: Original strand, 38972855 - 38973012
Alignment:
Q  108 aaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatactta 207  Q
    ||||||||||| ||||| | ||| |||||||||| | |  ||||||||| ||||| | |||| |  ||| ||||  ||||||||||||||||| ||| ||    
T  38972855 aaatgatttagggtttcagtttcgatttatataaaagggttaataaattgattttatgcatttgagatgggtttgagtatgggttcggggtgggtaccta 38972954  T
Q  208 tatcttcattacccatctcgtaaccgtgttttgaaatc-ggagaaatccaaactcata 264  Q
    |||   | ||||| ||| | || || |||||||||||| ||| ||| |||||||||||    
T  38972955 tattcccgttacctatcccatacccatgttttgaaatcgggaaaaacccaaactcata 38973012  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 12770626 - 12770706
Alignment:
Q  43 gagaaaagagagtacttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgttt 123  Q
    ||||| ||| || ||||| ||||||||||||||| |||| |||| | |||||| ||||   ||||||||||||||| ||||    
T  12770626 gagaagagaaagaacttaaagaagtgagtgtcgtttgaaagaccgagactttggttgtacgagtgaaatgatttagggttt 12770706  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 12773901 - 12773833
Alignment:
Q  184 gtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||||||||||| ||||| ||| ||||||| | ||| || || |||| |||| |||||||||||||||||    
T  12773901 gtatgggttcgaggtgggtacatatatctccgttatccgtcccgtacccgtattttgaaatcggagaaa 12773833  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 18452021 - 18451937
Alignment:
Q  128 ttctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatct 212  Q
    ||||||| |||||| | | |||||||||| ||||| |||| |||| | ||||||   |||| ||||||||||| |||||||||||    
T  18452021 ttctattaatataaaagggataataaattgattttctacaatcgggacgagtttgattatgagttcggggtgggtacttatatct 18451937  T

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Target: scaffold0005 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 211365 - 211441
Alignment:
Q  176 gagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    |||||| |||||||||||||||||| ||| ||||||    |||||| ||||||| |||| |||||||||||||||||    
T  211365 gagtttgggtatgggttcggggtgggtacatatatccctgttacccgtctcgtacccgtattttgaaatcggagaaa 211441  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 341
Target Start/End: Original strand, 42243360 - 42243559
Alignment:
Q  148 taataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatc-g 246  Q
    ||||||||| ||||| ||||||  | ||| |||| ||||||  || ||||||||||  |||||| || ||||||||||| || |||||| |||||||| |    
T  42243360 taataaattgattttctacatttaggatgggtttgggtatgaatttggggtggataaatatatcctcgttacccatctcatacccgtgtattgaaatcgg 42243459  T
Q  247 gagaaatccaaactcat-----aaccctatcaaagcggggaaactccgtcaatttaggtttggtttagaaggttactcacagatatgtgttttgttgcca 341  Q
    || ||| ||||||||||     |||||  ||||| ||||||||  ||||||| || ||||||||| ||| || | | | ||||||||  |||||||||||    
T  42243460 gaaaaacccaaactcatacccaaacccagtcaaaccggggaaaacccgtcaaattgggtttggttcagacggatgcccgcagatatggattttgttgcca 42243559  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 44172601 - 44172703
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| |||||||||   | |||||| || | || ||||||||||| ||||| |    
T  44172601 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcgggg 44172700  T
Q  250 aaa 252  Q
    |||    
T  44172701 aaa 44172703  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 44179301 - 44179403
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggag 249  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| |||||||||   | |||||| || | || ||||||||||| ||||| |    
T  44179301 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcgggg 44179400  T
Q  250 aaa 252  Q
    |||    
T  44179401 aaa 44179403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 37032291 - 37032191
Alignment:
Q  70 gtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacatt 169  Q
    ||||| |||||| |||| | ||| ||||||| | ||||||||||||||| ||||  | || ||||||||||| | |  ||||||||||||||| ||||||    
T  37032291 gtgtcatctgaaagaccgagactctgattgtatgagtgaaatgatttagggtttgagtttttatttatataaaatgggtaataaattaattttctacatt 37032192  T
Q  170 c 170  Q
    |    
T  37032191 c 37032191  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 39728646 - 39728706
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | | |||| |||||||||||||||||| |||||||||    
T  39728646 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacttatat 39728706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 44639249 - 44639309
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| |||| | |||| |||||||||||||||||| ||| |||||    
T  44639249 ataaaataattttttacatttggaacgggtttgggtatgggttcggggtgggtacctatat 44639309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 52198131 - 52198190
Alignment:
Q  151 taaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    |||| |||||||||||||| |||| | |||| |||||||||||||||||| ||| |||||    
T  52198131 taaagtaattttttacatttggaacgggtttgggtatgggttcggggtgggtacctatat 52198190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 23547056 - 23546995
Alignment:
Q  149 aataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    |||||| || ||||||||||| || | |||||| |||||||||||||||||| ||| |||||    
T  23547056 aataaagtagttttttacatttgggacgagtttgggtatgggttcggggtgggtacctatat 23546995  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 40890278 - 40890382
Alignment:
Q  106 tgaaatgatttagtgtttctgattctatttatataatacgtataataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatact 205  Q
    ||||||||| ||| ||||  | |||||||||||||  | | |||||||||| ||||| |||||| |  ||||| || ||||||||||||| || ||||||    
T  40890278 tgaaatgatctagagtttgagtttctatttatatagaagg-ataataaattgattttctacatttgagatgagcttgggtatgggttcggcgtagatact 40890376  T
Q  206 tatatc 211  Q
    ||||||    
T  40890377 tatatc 40890382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 17146263 - 17146203
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| || | | ||||  ||||||||||||||||||||| |||||    
T  17146263 ataaagtaattttttacatttgggaagggtttgtgtatgggttcggggtggatacctatat 17146203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 48305754 - 48305694
Alignment:
Q  150 ataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatat 210  Q
    ||||| |||||||||||||| |||| | |||| ||||| |||||||||||| ||| |||||    
T  48305754 ataaagtaattttttacatttggaacgggtttgggtataggttcggggtgggtacctatat 48305694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 33384 - 33470
Alignment:
Q  166 cattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattacccatctcgtaaccgtgttttgaaatcggagaaa 252  Q
    ||||||| | |||||| |||||||||||||||||| ||| |||||   | |||||| || | || ||||||||||||||||| ||||    
T  33384 cattcgggacgagtttgggtatgggttcggggtgggtacatatatacccgttacccgtcccatacccgtgttttgaaatcggggaaa 33470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 221
Target Start/End: Original strand, 14739 - 14904
Alignment:
Q  56 acttagagaagtgagtgtcgtctgaatgaccaaaactttgattgtgttagtgaaatgatttagtgtttctgattctatttatataatacgtataataaat 155  Q
    ||||||||||| ||  ||| |||||| |||  | ||||||||||||  | |||||||||||| |||||  | |||||||||||||| | |   |||||||    
T  14739 acttagagaagcgaaggtcatctgaaagactgagactttgattgtgcgaatgaaatgatttaatgtttaagtttctatttatataaaaggggaaataaat 14838  T
Q  156 taattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatcttcattaccc 221  Q
    | || |||||| ||| | | | |||| |||||| |||| |||||| |||| |||||  ||||||||    
T  14839 tgatgttttaccttcaggacgggtttgggtatgagttcagggtgggtactaatatccccattaccc 14904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 107506 - 107442
Alignment:
Q  148 taataaattaattttttacattcggaatgagtttaggtatgggttcggggtggatacttatatct 212  Q
    ||||||| |||||||  |||||||||| ||||||   |||| ||||||||||| |||||||||||    
T  107506 taataaagtaattttcaacattcggaacgagtttgaatatgagttcggggtgggtacttatatct 107442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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