View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_77 (Length: 431)
Name: NF1343_low_77
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_77 |
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| [»] scaffold0046 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 30 - 333
Target Start/End: Original strand, 50226940 - 50227246
Alignment:
| Q |
30 |
cttagaaccaaaa-aatgaattggagactcccatggcacataaatagttccttaacttgccaaactgaaggatcaaaatcactgatgaagacatgtcatg |
128 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50226940 |
cttagaaccaaaaaaatgaattggagactcccatggcacataaatacttcattaacttgccaaactgaaggatcaaaatcactgatgaagacatgtcatg |
50227039 |
T |
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| Q |
129 |
tattgaaaaatatgactattttttcagcaaaatcacttcatagagagcagtttatccgattgtttctgtatgtaaacaaa--tgttagattataaagcta |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
50227040 |
tattgaaaaatatgactattttttcagcaaaatcacttcatagagagcagtttatccgattgtttcggtatgtaaacaaatgtgttagattataaagcta |
50227139 |
T |
|
| Q |
227 |
aacatgcagacaccaacaaagtccatggaaaatgaaggagagaaaattaaaggatagtgcacgaatacaacggaaatataaaagagacagaatactaaga |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
50227140 |
aacatgcagacaccaacaaagtccatggaaaatgaaggagagaaaattaaaagatagtgcaagaatacaactgaaatataaaagagacagaatactaaga |
50227239 |
T |
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| Q |
327 |
tttactc |
333 |
Q |
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||||||| |
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| T |
50227240 |
tttactc |
50227246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 76957 - 76998
Alignment:
| Q |
332 |
tcaatgattttattcttttttccattcttctttttaaaatga |
373 |
Q |
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| T |
76957 |
tcaatgactttcttcttttttccattcttctttttaaaatga |
76998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 76903 - 76937
Alignment:
| Q |
299 |
gaaatataaaagagacagaatactaagatttactc |
333 |
Q |
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| T |
76903 |
gaaatataaaagagacagaacactaagatttactc |
76937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 34735651 - 34735692
Alignment:
| Q |
332 |
tcaatgattttattcttttttccattcttctttttaaaatga |
373 |
Q |
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| T |
34735651 |
tcaatgactttcttcttttttccattcttctttttaaaatga |
34735692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 28468136 - 28468102
Alignment:
| Q |
299 |
gaaatataaaagagacagaatactaagatttactc |
333 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
28468136 |
gaaatataaaagagacagaacactaagatttactc |
28468102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 34735597 - 34735631
Alignment:
| Q |
299 |
gaaatataaaagagacagaatactaagatttactc |
333 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
34735597 |
gaaatataaaagagacagaacactaagatttactc |
34735631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 24967636 - 24967677
Alignment:
| Q |
332 |
tcaatgattttattcttttttccattcttctttttaaaatga |
373 |
Q |
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| T |
24967636 |
tcaatgactttcttcttttttccattcttctttttaaaatga |
24967677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 24967582 - 24967616
Alignment:
| Q |
299 |
gaaatataaaagagacagaatactaagatttactc |
333 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
24967582 |
gaaatataaaagagacagaacactaagatttactc |
24967616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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