View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_84 (Length: 412)
Name: NF1343_low_84
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_84 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 402
Target Start/End: Original strand, 45689268 - 45689662
Alignment:
| Q |
12 |
atctacccacgaatgacaaatatatacaattgaacattttataatgataaagaaagtgaaataatttcctaacaactagttatgcttatgcagataccgc |
111 |
Q |
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| T |
45689268 |
atctacctacgaatgacaaatatatacaattgaacattttataatgataaagaaagtgaaataatttcctaacaactagttatgcttatgcagataccgc |
45689367 |
T |
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| Q |
112 |
ctggtactag----tgctagtttccaatgtggtaagttaaagaaaaatggaaataaagtgaatgcaggttgtgaaaatgagggagattgtaaaaagttat |
207 |
Q |
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| T |
45689368 |
ctggtactagctagtgctagtttccaatgtggtaagtttaagaaaaatggaaataaagtgaatgcaggttgtgaaaatgagggagattgtaaaaagttat |
45689467 |
T |
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| Q |
208 |
acctagttcacgttcaccggccattctgaaaagcaaagcagcctaatagaagaattgatgatggattagaaaataagattagcaataaagaattaaggaa |
307 |
Q |
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| T |
45689468 |
acctagttcgcgttcaccggccattctgaaaagcaaagcagcctaatagaagaattgatgatggattagaaaataagattagcaatagagaattaaggaa |
45689567 |
T |
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| Q |
308 |
tttgtggcaataattcatcagatatgtaataattaattaaacattactctgatgacttgtgcatgagctctaatcatgcttttcttttgttcttt |
402 |
Q |
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| T |
45689568 |
tttgtggcaataattcatcagatatgtaataattaattaaacattactctgatgacttgtgcatgagctctaatcatgcttttcttttgttcttt |
45689662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 1436910 - 1436852
Alignment:
| Q |
205 |
tatacctagttcacgttcaccggccattctgaaaagcaaagcagcctaatagaagaatt |
263 |
Q |
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| T |
1436910 |
tatacctagttcacgttcaccggccaatctaaaaagcagtgcagcctgatagaacaatt |
1436852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 1436785 - 1436735
Alignment:
| Q |
346 |
aaacattactctgatgacttgtgcatgagctctaatcatgcttttcttttg |
396 |
Q |
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| T |
1436785 |
aaacattactcttatgacttgtgcatgcgctctaattaagctcttcttttg |
1436735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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