View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_85 (Length: 404)
Name: NF1343_low_85
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_85 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 153 - 306
Target Start/End: Complemental strand, 479363 - 479210
Alignment:
| Q |
153 |
atgcggcatataaagacggtataacatcatgtggaacagaaaaccataactagtttagataagtccaatgctttgtgcaccgtccatcattgagtcaaca |
252 |
Q |
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| T |
479363 |
atgcggcatataaagacggtataacatcatgtggaacagaaaaccataactagtttagataagtccaatgctttgtgcaccatccatcattgagtcaaca |
479264 |
T |
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| Q |
253 |
acataagtgacgattttttggcaagtactaaaacatcttcaaagtaataaacat |
306 |
Q |
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| T |
479263 |
acataagtgacgattttttggcaagtactaaaacatcttcaaagtaataaacat |
479210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 50228754 - 50228829
Alignment:
| Q |
7 |
cccttcaatccaccaagaatgaaaatctacaacaaaaatcaatctatgattgttcaaacactaccatgattggagt |
82 |
Q |
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| T |
50228754 |
cccttcaatccaccaagaatgaaaatctacaacaaaaatcaatctatgattgttcaaacactaccatgattggagt |
50228829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 305 - 396
Target Start/End: Complemental strand, 478785 - 478694
Alignment:
| Q |
305 |
atgatgatggtgattaggatttgtatgaatcatctctatgttcctatttggtaatttgaggtctggaacaataaaatctgagttcctatgat |
396 |
Q |
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| T |
478785 |
atgatgatggtgattaggatttgtatgaatcccctctatgttcctatttgctaatttgaggtccggaacaataaaatccgagttcctatgat |
478694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 479465 - 479383
Alignment:
| Q |
76 |
ttggagtaaaagatcaagtacttggagcataacaacgacaatctgatcgttagcatatttaaatcccacataacaacatgcggcat |
161 |
Q |
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| T |
479465 |
ttggcgtaaaagatcaagtacttggagcataacaac---aatctgagcgttagcatatttaaatcccaaataacaaaatgcggcat |
479383 |
T |
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