View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1343_low_87 (Length: 403)
Name: NF1343_low_87
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_87 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 194 - 375
Target Start/End: Original strand, 51523949 - 51524130
Alignment:
| Q |
194 |
caatgactttgttggttcatccctcagagtttctaccgccaaatttgccaactctgctgaagaagttatcaccgttttacaaaaagtcatctctatttta |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51523949 |
caatgactttgttggttcatccctcagagtttctaccgccaaatttgccaactctgctgaagaagttatcaccgttttacaaaaagtcatctctatttta |
51524048 |
T |
|
| Q |
294 |
tcacgcttcactaatgtctttggtcactctcgcacctcaaacgccgtttcggattgcctcgatttacttgacatgtccttag |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51524049 |
tcacgcttcactaatgtctttggtcactctcgcacctcaaacgccgtttcggattgcctcgatttacttgacatgtccttag |
51524130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 51523765 - 51523893
Alignment:
| Q |
10 |
aacaaaataaaaagcatagaattagtgacacttacttactcatcgtgtctattatatttcaaagttctaaaatggaactatgttcctcaaaacagccatc |
109 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51523765 |
aacaaaataaaaaccatagaattagtgacacttacttactcatcgtgtctattatatttcaaagttctaaaatggaactatgttcctcaaaacagccatc |
51523864 |
T |
|
| Q |
110 |
cacaacaacactctcaataactacattca |
138 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
51523865 |
cacaacaacactctcaataactacattca |
51523893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 51530109 - 51530192
Alignment:
| Q |
47 |
actcatcgtgtctattatatttcaaagttctaaaatggaactatgttcctcaaaacagccatccacaacaacactctcaataac |
130 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51530109 |
actcgtcgtgtctattacatttcaaagttctaaaatggaactatgttcctcaaaacagccatccacaacaacactctcaataac |
51530192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 51530253 - 51530355
Alignment:
| Q |
194 |
caatgactttgttggttcatccctcagagtttctaccgccaaatttgccaactctgctgaagaagttatcaccgttttacaaaaagtcatctctatttta |
293 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || |||||||| |||||||||| | ||||||| ||||||||||||||||||| ||| |||||| |
|
|
| T |
51530253 |
caataactttgttggttcatccctcagagtttctcccaccaaattttccaactctgccaatgaagttaaaaccgttttacaaaaagtcacctccatttta |
51530352 |
T |
|
| Q |
294 |
tca |
296 |
Q |
| |
|
||| |
|
|
| T |
51530353 |
tca |
51530355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University