View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_89 (Length: 400)
Name: NF1343_low_89
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 371
Target Start/End: Original strand, 11441789 - 11442144
Alignment:
| Q |
16 |
atgaaagtgtgtaacattatatttatcgatcaccctaatagtctcatcaatgtcaaatttccgcattacaacgattgtagaacccaatgacaataatccc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11441789 |
atgaaagtgtgtaacattatatttatcgatcaccctaatagtctcatcaatgtcaaatttccgcattacaacgattgtagaacccaatgacaataatccc |
11441888 |
T |
|
| Q |
116 |
gtagcaaagagagataaaccatataaatggaacatcggcaaaacatctagatacacatttttggaactagagtattcatatttagaagcttcaaaccttg |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11441889 |
gtagcaaatagagataaaccatataaatggaacatcggcaaaacatctagatacacatttttggaactagagtattcatatttagaagcttcaaaccttg |
11441988 |
T |
|
| Q |
216 |
ccgaaagctcaaccatagcaataagatttctatgagttaaaacaactcctttgctcacaccagtagtaccagaagaaaacaatatagcagcagtgtcttc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11441989 |
ccgaaagctcaaccatagcaataagatttctatgagttaaaacaactcctttgctcacaccagtagtaccagaagaaaacaatatagcagcagtgtcttc |
11442088 |
T |
|
| Q |
316 |
ttgtttaataaccggcttttgaggcaaaacaaagttaccagaaatcaggttaaaaa |
371 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
11442089 |
ttgtttaataaccgacttttgaggcaaaacaaagttaccagaaatcaggttaaaaa |
11442144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 11452326 - 11452676
Alignment:
| Q |
16 |
atgaaagtgtgtaacattatatttatcgatcaccctaatagtctcatcaatgtcaaatttccgcattacaacgattgtagaacccaatgacaataatccc |
115 |
Q |
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||||||||||||||| ||||||||||| ||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| |
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| T |
11452326 |
atgaaagtgtgtaactttatatttatcaatcgccctaatagcctcatcaatgtcatatttccttattacaacgattgtagaacccagtgacaataatccg |
11452425 |
T |
|
| Q |
116 |
gtagcaaagagagataaaccatataaatggaacatcggcaaaacatctagatacacatttttggaactagagtattcatatttagaagcttcaaaccttg |
215 |
Q |
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||||||||||| | ||||||||||||||||||||| ||||||||| |||||| |||| | |||||||||||||| ||||||| ||||||||||||||| |
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| T |
11452426 |
gtagcaaagagcgctaaaccatataaatggaacataggcaaaacagctagatgcacagtcttggaactagagtaatcatattgagaagcttcaaacctca |
11452525 |
T |
|
| Q |
216 |
ccgaaagctcaaccatagcaataagatttctatgagttaaaacaactcctttgctcacaccagtagtaccagaagaaaacaatatagcagcagtgtcttc |
315 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| ||||||||||||| |
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| T |
11452526 |
caaaaagctcaaccatagcaataagatttctatgagttaaaacaactcctttgctcacacctgtagtaccagaagaatataatataccagcagtgtcttc |
11452625 |
T |
|
| Q |
316 |
ttgtttaataaccggcttttgaggcaaaacaaagttaccagaaatcaggtt |
366 |
Q |
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|||||||||||||||| ||||||||||| |||||| |||| |||| ||||| |
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| T |
11452626 |
ttgtttaataaccggcctttgaggcaaatcaaagtcaccataaataaggtt |
11452676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 29912460 - 29912109
Alignment:
| Q |
18 |
gaaagtgtgtaacattatatttatcgatcaccctaatagtctcatcaatgtcaaatttccgcattacaacgattgtagaacccaatgacaataatcccgt |
117 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||| ||| |||||||||||||||| |||||||| || |||||| ||||| ||||| ||||||| |
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| T |
29912460 |
gaaagtgtgtaacattatatttgtcaatcaccctaataacctcgtcaatgtcaaatttcctcattacaatgactgtagagcccaacgacaacaatcccgc |
29912361 |
T |
|
| Q |
118 |
agcaaagagagataaaccatataaatggaacatcggcaaaacatctagatacacatttttggaactagagtattcatatttagaagcttcaaaccttgcc |
217 |
Q |
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||||||||| ||||||||||| | ||| ||||| ||||||||| ||||| ||||| | ||||||| |||||| ||||||| |||||||||||| || | |
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| T |
29912360 |
agcaaagagcgataaaccatacacatgaaacattggcaaaacagctagaaacacactcttggaacaagagtaatcatattgagaagcttcaaatctcaca |
29912261 |
T |
|
| Q |
218 |
gaaagctcaaccatagcaataagatttctatgagttaaaacaactcctttgctcacaccagtagtaccagaagaaaacaatatagcagcagtgtcttctt |
317 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||| |||||||| ||||||| ||||| | |
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| T |
29912260 |
aaaagctcaaccatagaaataagatttctatgagttaaaacaactcctttactcacacctgtagtcccagatgaatacaatataccagcagtatcttcct |
29912161 |
T |
|
| Q |
318 |
gtttaataaccggcttttgaggcaaaacaaagttaccagaaatcaggttaaa |
369 |
Q |
| |
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|||||||||| | ||||||||||| |||| |||||| ||| |||||||| |
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| T |
29912160 |
gtttaataactaccctttgaggcaaatcaaatttaccataaagaaggttaaa |
29912109 |
T |
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