View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_90 (Length: 398)
Name: NF1343_low_90
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_90 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 30 - 388
Target Start/End: Complemental strand, 5871244 - 5870886
Alignment:
| Q |
30 |
aacaatattatataatgtaagaacagaaatcctggttcaaatgaataaagtatgtgctcctatttatatttctataatagtattggagacaaacatacaa |
129 |
Q |
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| T |
5871244 |
aacaatattatataatgtaagaacagaaatcctggttcaaatgaataaagtatgtgctcctatttatatttctattatagtattggagacaaacatacaa |
5871145 |
T |
|
| Q |
130 |
agaaagtaattacacataaaacctaattgatcctaacatgattacatatcaattactagtacaataattagagaatcatatgtttggaaaatgaatgaca |
229 |
Q |
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| T |
5871144 |
agaaagtaattacacataaaacctaattgatcctaacatgattacatatcaattactagtacaataattagagaatcatatgtttggaaaatgaatgaca |
5871045 |
T |
|
| Q |
230 |
aataatgatcatcatattcacatccattaaagcaggtacaaaaatgtgctaccttgagggccaacactttgagatggaggaggaagccaaacatgtgtaa |
329 |
Q |
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| T |
5871044 |
aataatgatcatcatattcacatccattaaagcaggtacaaaaatgtgctaccttgaggaccaacactttgagatggaggaggaagccaaacatgtgtaa |
5870945 |
T |
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| Q |
330 |
ttccagcatttgctaggtcaggaatgaggttcttcaaagagttgtaccatcctcctttg |
388 |
Q |
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| T |
5870944 |
ttccagcatttgctaggtcaggaatgaggttcttcaaagagttgtaccatcctcctttg |
5870886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 9466043 - 9466075
Alignment:
| Q |
152 |
ctaattgatcctaacatgattacatatcaatta |
184 |
Q |
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| T |
9466043 |
ctaattgatccgaacatgattacatatcaatta |
9466075 |
T |
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