View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_91 (Length: 397)
Name: NF1343_low_91
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_91 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 9 - 397
Target Start/End: Complemental strand, 48415039 - 48414651
Alignment:
| Q |
9 |
gaagaatattggaggcgtgaagaaagtgaaatatacgaaagagaagctgtgatgaaagcacgtgagcgtgattttgctaaacggagagaatcttccattg |
108 |
Q |
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| T |
48415039 |
gaagaaaattggaggcgggaagaaagtgaaatatacgaaagagaagctgtgatgaaagcacgtgagcgtgattttgctaaacggagagaatcttccattg |
48414940 |
T |
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| Q |
109 |
tttccagcattgagaaaataacaggtcgaagattttctagtcagtgacagtaatagaatagaagattaatgtaaggattatttaaattttattatagatg |
208 |
Q |
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| T |
48414939 |
tttccagcattgagaaaataacaggtcgaagattttctagtcagtgacagtaatagaatagaagattaatgtaaggattatttaaattttattatagatg |
48414840 |
T |
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| Q |
209 |
tagttttagtttgtgttgaaagaaagattgaaatttgccaactacattcatttgcagaaaatgctgaatgcatgtcacaactgcaaccatcaataatgat |
308 |
Q |
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| T |
48414839 |
tagttttagtttgtgttgaaagaaagattgaaatttgccaactacattcatttgcagaaaatgctgaatgcatgtcacaactgcaaccatcaataatgat |
48414740 |
T |
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| Q |
309 |
gtagttttaatatgattagtttgcatatcctgaactttggttgagatgtaaaagtaagtgaatggtcaggatgcctgcatcgaaccaaa |
397 |
Q |
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| T |
48414739 |
gtagttttaatatgattagtttgcatatcctgaactttggttgagatgtaaaagtaagtgaatggtcaggatgcctgcattgaaccaaa |
48414651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 48403722 - 48403658
Alignment:
| Q |
178 |
tgtaaggattatttaaattttattatagatgtagttttagtttgtgttgaaagaaagattgaaatt |
243 |
Q |
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| T |
48403722 |
tgtaagtattatttcaattttatt-taaatgcaatttgagtttgtgttgaaaaaaagattgaaatt |
48403658 |
T |
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