View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_93 (Length: 392)
Name: NF1343_low_93
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_93 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 363
Target Start/End: Complemental strand, 40895123 - 40894765
Alignment:
| Q |
9 |
atcataggaaagaacaagatacccataataagcgagggaaagaagaacaaaaagcatttattgggcaaaacaatccaaacttgttacgaatccaagatac |
108 |
Q |
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| T |
40895123 |
atcataggaaagaacaagatacccataataagcgagggaaagaagaacaaaaagcatttattgggcaaaacaatccaaacttgtttcgaatccaagatac |
40895024 |
T |
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| Q |
109 |
aaataacaagcaaa----gtgaattaaggtcagactcctaatactagcctactatatgataattgccatcacacaagtgggaaacgaacatctactatta |
204 |
Q |
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| T |
40895023 |
aaataacaagcaaacaaagtgaattaaggtcagactcctaatactagcctactatatgataattgccatcatacaagtgggaaacgaacatctactatta |
40894924 |
T |
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| Q |
205 |
ctattatacatcaagtgacatttttcgcttgtcaatgtcgcaagagtttttggtgttgccttcagaatcatcatcaaactaatcatcttcagaatcatca |
304 |
Q |
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| T |
40894923 |
ctattatacatcaagtgacatttttcgcttgtcaatgtcgcaagagtttttggtgttgccttcagaatcatcatcaaactaatcatcttcagaatcatca |
40894824 |
T |
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| Q |
305 |
tttgcatctgttgatttccacttctgctcatcagagctaagctcctccaaggttgaaat |
363 |
Q |
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| T |
40894823 |
tttgcatctgttgatttccacttctgctcatcagagctaagctcctccaaggttgaaat |
40894765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 146 - 363
Target Start/End: Original strand, 40898035 - 40898259
Alignment:
| Q |
146 |
tactagcctactatatgataattgccatcacacaagtgggaaacgaacatctactattactattatacatcaagtgacatttttcgcttgtcaatgtcgc |
245 |
Q |
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| T |
40898035 |
tactagcctactataggatgattgccatcacacgagtgggaaatgaacatctactattactattataca------gacatttttcgcttgtcattgtcgc |
40898128 |
T |
|
| Q |
246 |
aagagtttttggtgttgccttcagaatcatc-atcaaa---ctaatcatc------ttcagaatcatcatttgcatctgttgatttccacttctgctcat |
335 |
Q |
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| T |
40898129 |
aagagattttggttttgccttcagaatcatcaaactaaggcataatcagcaccaaaaacagaatcatcatttgcatctgctgatttccacttctgcacat |
40898228 |
T |
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| Q |
336 |
c---agagctaagctcctccaaggttgaaat |
363 |
Q |
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| T |
40898229 |
cagaagagctcagctcctccaaggttgaaat |
40898259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 44153441 - 44153530
Alignment:
| Q |
274 |
atcatcaaactaatcatcttcagaatcatcatttgcatctgttgatttccacttctgctcatcagagctaagctcctccaaggttgaaat |
363 |
Q |
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| T |
44153441 |
atcatcaaactaatcgtcttcagaatcatcattcgcatctgctgatttccacttcggcacatcagagctcagctcctccaaggttgaaat |
44153530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 44153385 - 44153435
Alignment:
| Q |
147 |
actagcctactatatgataattgccatcacacaagtgggaaacgaacatct |
197 |
Q |
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| T |
44153385 |
actagcctactataggatgattgccatcacacgagtgggaaatgaacatct |
44153435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 40897927 - 40897975
Alignment:
| Q |
60 |
aagcatttattgggcaaaacaatccaaacttgttacgaatccaagatac |
108 |
Q |
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||||||| ||||||| || |||||||||||||||| |||||||||||| |
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| T |
40897927 |
aagcattatttgggcataataatccaaacttgttacaaatccaagatac |
40897975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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