View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_low_95 (Length: 389)

Name: NF1343_low_95
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_low_95
NF1343_low_95
[»] chr4 (12 HSPs)
chr4 (46-360)||(7044293-7044603)
chr4 (13-238)||(6992514-6992738)
chr4 (22-360)||(7001016-7001345)
chr4 (46-209)||(7037684-7037847)
chr4 (46-209)||(7025863-7026026)
chr4 (35-209)||(7011251-7011425)
chr4 (46-209)||(7018895-7019058)
chr4 (46-214)||(7051516-7051685)
chr4 (274-360)||(7010003-7010089)
chr4 (283-360)||(6992216-6992295)
chr4 (309-360)||(7036627-7036678)
chr4 (309-360)||(7018040-7018092)
[»] chr3 (1 HSPs)
chr3 (48-112)||(46185214-46185278)
[»] chr2 (1 HSPs)
chr2 (47-112)||(5877122-5877187)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 46 - 360
Target Start/End: Complemental strand, 7044603 - 7044293
Alignment:
Q  46 aaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctcaggatcattttctgatt 145  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||    
T  7044603 aaattacctatttgataggcaagggcagaaaaagaagaacaaccaggaccaccagatatccaaagcataagagggtctttcttaggattattttctgatt 7044504  T
Q  146 tgataaaatagtaaaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaaatatatatgaacatacaaatacattacttacttgct 245  Q
    ||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||    
T  7044503 tgacaaaataatagaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaaatatatatgaacatacaaatacatt----acttgct 7044408  T
Q  246 acactgtacccccattaacaggaggtgaaaatgaaataaaatatggaatgattaagattactgaccctgtttcaagttcaaatggaagaggtccttgaaa 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  7044407 acactgtacccccattaacaggaggtgaaaatgaaataaaatatggaatgattaaaattgctgaccctgtttcaagttcaaatggaagaggtccttgaaa 7044308  T
Q  346 accaggaagatgttc 360  Q
    |||||||||||||||    
T  7044307 accaggaagatgttc 7044293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 6992738 - 6992514
Alignment:
Q  13 aatattcacaaaaacaaataaattgtgatttgtaaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6992738 aatattcacaaaaacaaataaattgtgatttgtaaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagca 6992639  T
Q  113 taagagggtctttctcaggatcattttctgatttgataaaatagtaaaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaaata 212  Q
    ||||||||||||| | |||||| |||||||||||||||||||| || ||||||||||||||||||| || ||| |||||||||||||||||||| |||||    
T  6992638 taagagggtctttttgaggatcgttttctgatttgataaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatc-aaata 6992540  T
Q  213 tatatgaacatacaaatacattactt 238  Q
    |||||||||| |||| ||||||||||    
T  6992539 tatatgaacacacaactacattactt 6992514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 22 - 360
Target Start/End: Complemental strand, 7001345 - 7001016
Alignment:
Q  22 aaaaacaaataaattgtgatttgtaaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggt 121  Q
    ||||||||  || |||| ||||| ||||||||||||||||||  |||| |||||||||||||||| |||||||| |||| |||||||||||||||||| |    
T  7001345 aaaaacaataaagttgtaatttgaaaattacctatttgatagaaaagggcagaaaaagaagaacaaccaggacctccagataaccaaagcataagaggat 7001246  T
Q  122 ctttctcaggatcattttctgatttgataaaatagtaaaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaaatatatatgaac 221  Q
    |||||| ||||| | |||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||   || ||||| |    
T  7001245 ctttctgaggattactttctgatttgacaaaataatagaacacttgcatgtcatcatttgcttctcctaaccctacgtacctatcaa---atttatgacc 7001149  T
Q  222 atacaaatacattacttacttgctacactgtacccccattaacaggaggtgaaaatgaaataaaatatggaatgattaagatt--actgaccctgtttca 319  Q
       ||| ||||    |||||||||||| || |||||||||  |||||||||||||||||| ||||||||||||||||| ||||   || |||||||||||    
T  7001148 ---caactaca----ttacttgctacaatgcacccccatt-gcaggaggtgaaaatgaaacaaaatatggaatgattaggattgctctcaccctgtttca 7001057  T
Q  320 agttcaaatggaagaggtccttgaaaaccaggaagatgttc 360  Q
    |||||||| ||||| || ||||||||||||||||| |||||    
T  7001056 agttcaaaaggaagtggaccttgaaaaccaggaagctgttc 7001016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 7037847 - 7037684
Alignment:
Q  46 aaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctcaggatcattttctgatt 145  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |    
T  7037847 aaattacctatttgatagacaaggccagaaaaagaagaacaaccaggaccaccagttaaccaaagcataagagggtctttctgaggattattttctgact 7037748  T
Q  146 tgataaaatagtaaaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaa 209  Q
    |||||||||| || |||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  7037747 tgataaaataatagaacacttgcatgtcatcatttgattctcccaaccccacatacctatcaaa 7037684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 7026026 - 7025863
Alignment:
Q  46 aaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctcaggatcattttctgatt 145  Q
    ||||||||||||| |||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |    
T  7026026 aaattacctatttcatacacaagtccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctgaggattattttctgact 7025927  T
Q  146 tgataaaatagtaaaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaa 209  Q
    | | ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  7025926 ttacaaaatagtaaaacacttgcatgtcatcatttgaatctcctaaccccacgtacctatcaaa 7025863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 35 - 209
Target Start/End: Complemental strand, 7011425 - 7011251
Alignment:
Q  35 ttgtgatttgtaaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctcaggatc 134  Q
    |||| ||||| ||||||||||||||||||  ||||||||||| |||||| || |||||||||||||||| ||||||||||||||| ||||||| |||||     
T  7011425 ttgtaatttgaaaattacctatttgatagagaaggccagaaatagaagagcaaccaggaccaccagttatccaaagcataagaggatctttctgaggatt 7011326  T
Q  135 attttctgatttgataaaatagtaaaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaa 209  Q
    | ||||||| || | |||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7011325 actttctgactttacaaaataatagaacacttgcatgtcatcatttgcttctcctaaccctacgtacctatcaaa 7011251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 7019058 - 7018895
Alignment:
Q  46 aaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctcaggatcattttctgatt 145  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| || ||||||||||| | ||||| ||||||||| |    
T  7019058 aaattacctatttgatgggcaaggccagaaaaagaagaacaaccaggaccaccagataaccaaagaattagagggtctttttgaggattattttctgact 7018959  T
Q  146 tgataaaatagtaaaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaa 209  Q
    | | |||||| |||||||||||||||||||||| || ||| ||||| |||||||||||||||||    
T  7018958 ttacaaaataataaaacacttgcatgtcatcatctgtttcccctaatcccacgtacctatcaaa 7018895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 7051685 - 7051516
Alignment:
Q  46 aaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctcaggatcattttctgatt 145  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| ||||||||| |    
T  7051685 aaattacctatttcataagcaagtccagaaaaagaagaacagccaggaccaccagataaccaaagcataagaggatctttctgaggattattttctgact 7051586  T
Q  146 tgataaaatagtaaaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatc-aaaatata 214  Q
    | | |||||| || |||||||||||||| |||| || ||| |||||||||| ||||||||| ||||||||    
T  7051585 taacaaaataatagaacacttgcatgtcgtcatctgtttcccctaaccccaagtacctatcgaaaatata 7051516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 274 - 360
Target Start/End: Complemental strand, 7010089 - 7010003
Alignment:
Q  274 aaatgaaataaaatatggaatgattaagattactgaccctgtttcaagttcaaatggaagaggtccttgaaaaccaggaagatgttc 360  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||    
T  7010089 aaatgaaataaaaaatggaatgattaagattactgacccagtttcaagttcaaaaggaagtggcccttgaaaaccaggaagatgttc 7010003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 360
Target Start/End: Complemental strand, 6992295 - 6992216
Alignment:
Q  283 aaaatatggaatgattaagattactg--accctgtttcaagttcaaatggaagaggtccttgaaaaccaggaagatgttc 360  Q
    |||||||||||||||||||||| ||   |||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  6992295 aaaatatggaatgattaagattgctctcacccagtttcaagttcaaaaggaagaggtccttgaaaaccaggaagatgttc 6992216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 7036678 - 7036627
Alignment:
Q  309 accctgtttcaagttcaaatggaagaggtccttgaaaaccaggaagatgttc 360  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||| |||||    
T  7036678 accctgtttcaagttgaaaaggaagaggtccttgaaaaccaggaaggtgttc 7036627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 7018092 - 7018040
Alignment:
Q  309 accctgtttcaagttcaaatggaagaggtccttg-aaaaccaggaagatgttc 360  Q
    |||| |||||||||||||| ||||| |||||||| |||||||||||| |||||    
T  7018092 accccgtttcaagttcaaaaggaagtggtccttgaaaaaccaggaagctgttc 7018040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 46185214 - 46185278
Alignment:
Q  48 attacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagca 112  Q
    ||||||||||| | |||||||||||||||||| ||| || |||||||||||||||||||||||||    
T  46185214 attacctatttcaaaggcaaggccagaaaaagcagagcaaccaggaccaccagttaaccaaagca 46185278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 5877187 - 5877122
Alignment:
Q  47 aattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagca 112  Q
    |||||||||||| |||  |||||||||| |||| ||| || ||||| |||||||||| ||||||||    
T  5877187 aattacctatttcatacacaaggccagacaaagcagagcaaccaggtccaccagttagccaaagca 5877122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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