View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_low_99 (Length: 380)
Name: NF1343_low_99
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_low_99 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 22732852 - 22732561
Alignment:
| Q |
11 |
caaagggtctaatactgattggactccaatgacacataattggggacaagtttggcatacgggagttaatttggtaggacaagatttgtcattttgggtt |
110 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22732852 |
caaagggtctaatactgattggactccaatgatacataattggggacaagtttggcatacgggagttaatttggtaggacaaaatttgtcattttgggtt |
22732753 |
T |
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| Q |
111 |
acgacaactgatcgaaaagctttactgttcacttccgttgctccttccaattggcaatttggacaaacctacgaaagcccaaccaatttttaga------ |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22732752 |
acgacaactgatcgaaaagctttactgttcacttccgttactccttccaattggcaatttggacaaacctacgaaagcccagccaatttttagatttttt |
22732653 |
T |
|
| Q |
205 |
ttannnnnnnnnggtgcaaaagagaggaaaatttgccaattttaagatttattaagttttgtttagaatcctaaaatacatcaagttataat |
296 |
Q |
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||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22732652 |
ttatttttttttggtgcaaaagaggggaaaatttgccaattttaagatttattaagttttgtttagaatcctaaaatacatcaagttataat |
22732561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 20522190 - 20522020
Alignment:
| Q |
11 |
caaagggtctaatactgattggactccaatgacacataattggggacaagtttggcatacgggagttaatttggtaggacaagatttgtcattttgggtt |
110 |
Q |
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||||||||||| ||| |||||| | | ||| |||| |||||||||||| ||||| |||| ||| | |||||||| || ||||| || ||||||| |||| |
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| T |
20522190 |
caaagggtctagtacatattggatttccatggcacacaattggggacaattttgggatactggattgaatttggttggtcaagacttatcatttttggtt |
20522091 |
T |
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| Q |
111 |
acgacaactgatcgaaaagctttactgttcacttccgttgctccttccaattggcaatttggacaaaccta |
181 |
Q |
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|| |||| ||| ||||||||||| ||| | || ||||||||||| ||||||||||||||||||||||| |
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| T |
20522090 |
actacaagcgatggaaaagctttagagtttaattttgttgctccttctaattggcaatttggacaaaccta |
20522020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 42385728 - 42385558
Alignment:
| Q |
11 |
caaagggtctaatactgattggactccaatgacacataattggggacaagtttggcatacgggagttaatttggtaggacaagatttgtcattttgggtt |
110 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||| || || ||||| || ||||| |||||| ||||||||||||||||| |
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| T |
42385728 |
caaagggtctaatactgatctggctccaatgacacataattggggacaagtttgacaaactggagtcaaattggttggacaaaatttgtcattttgggtt |
42385629 |
T |
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| Q |
111 |
acgacaactgatcgaaaagctttactgttcacttccgttgctccttccaattggcaatttggacaaaccta |
181 |
Q |
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|| ||| ||||||||| ||||| ||| |||| | || |||||| |||||||||||| ||||||||| |
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| T |
42385628 |
acatcaattgatcgaaatgctttgaagtttacttatggtgttccttcttattggcaatttgtacaaaccta |
42385558 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 42385936 - 42386095
Alignment:
| Q |
14 |
agggtctaatactgattggactccaatgacacataattggggacaagtttggcatacgggagttaatttggtaggacaagatttgtcattttgggttacg |
113 |
Q |
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||||| ||||||| |||| ||||||||||||||||||||||||||||||| || || ||||| | ||||| ||| |||| |||| |||||||||||| |
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| T |
42385936 |
agggtttaatactagttgggctccaatgacacataattggggacaagtttgacacactggagtcatattggttggaaaagacttgtaattttgggttaca |
42386035 |
T |
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| Q |
114 |
acaactgatcgaaaagctttactgttcacttccgttgctccttccaattggcaatttggacaaac |
178 |
Q |
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|||| ||||||||||||||| ||| || ||| ||||||||||||||||||||||||||| |
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| T |
42386036 |
acaagtgatcgaaaagctttgaagtttac-----ttgttccttccaattggcaatttggacaaac |
42386095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 42386125 - 42386168
Alignment:
| Q |
262 |
tttgtttagaatcctaaaatacatcaagttataatagacattag |
305 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
42386125 |
tttgtttagaatccaaaaatacatctagttataatagacattag |
42386168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 44558 - 44439
Alignment:
| Q |
11 |
caaagggtctaatactgattggactccaatgacacataattggggacaagtttggcatacgggagttaatttggtaggacaagatttgtcattttgggtt |
110 |
Q |
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|||||| ||||| ||||||||| ||||||||||||||||||||||||| |||||| |||||| | || ||||| |||||||| ||||||||||||||| |
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| T |
44558 |
caaaggttctaagactgattgggctccaatgacacataattggggacagaattggcacacgggattaaaattggtcggacaagacttgtcattttgggtt |
44459 |
T |
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| Q |
111 |
acgacaactgatcgaaaagc |
130 |
Q |
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|| |||| |||||||||||| |
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| T |
44458 |
acaacaagtgatcgaaaagc |
44439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 175
Target Start/End: Original strand, 3745495 - 3745623
Alignment:
| Q |
47 |
taattggggacaagtttggcatacgggagttaatttggtaggacaagatttgtcattttgggttacgacaactgatcgaaaagctttactgttcacttcc |
146 |
Q |
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||||||||||||| ||||||| | ||| |||||| |||||||||| |||||||||| |||| |||| |||| ||||| ||||| ||| |||| |
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| T |
3745495 |
taattggggacaaaattggcatcctggatctaattttgtaggacaagctttgtcatttcaagttagtacaagtgatggaaaaactttaacgtttgattcc |
3745594 |
T |
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| Q |
147 |
gttgctccttccaattggcaatttggaca |
175 |
Q |
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|||| ||||||||| |||||||||||||| |
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| T |
3745595 |
gttgttccttccaactggcaatttggaca |
3745623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 2773321 - 2773369
Alignment:
| Q |
11 |
caaagggtctaatactgattggactccaatgacacataattggggacaa |
59 |
Q |
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|||||||||||| | ||||||| ||||||||||||||||| |||||||| |
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| T |
2773321 |
caaagggtctaaaagtgattgggctccaatgacacataataggggacaa |
2773369 |
T |
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