View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13440_low_1 (Length: 523)
Name: NF13440_low_1
Description: NF13440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13440_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 9 - 508
Target Start/End: Complemental strand, 51976607 - 51976106
Alignment:
| Q |
9 |
gaagaatatcgtctcagagaaacagtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtat |
108 |
Q |
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| T |
51976607 |
gaagaatatcgtctcagagaaacagtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtat |
51976508 |
T |
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| Q |
109 |
aaatagtagtgaagagtcacaactattggtgatatgagacatgttcacgcatcaagagacgtgttttttgagtgagttcgtaaatgggttataacatttc |
208 |
Q |
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| T |
51976507 |
aaatagtagtgaagagtcacaactattggtgatatgagacatgttcacgcatcaagagacgtgttttttgagtgagttcgtaaatgggttataacatttc |
51976408 |
T |
|
| Q |
209 |
aagtgcactcgttacaattgcagcgtgaatttgaaagtattacactgctttacacagtcagt--aacaacgtctgtgttaattagggtttatatgtgaca |
306 |
Q |
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| T |
51976407 |
aagtgtactcgttacaattgcagcgtgaatttgaaaggattacactgctttacacagtcagtaaaacaacgtctgtgttaattagggtttatatgtgaca |
51976308 |
T |
|
| Q |
307 |
tttgcatgtaacaattagaaacacacaagtgtaaatattattacgaaatttgaaagtaataaagaaaaattgcgaggaaaacgtacctccatattgagag |
406 |
Q |
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| T |
51976307 |
tttgcatgcaacaattagaaacacacaagtgtaaatattattacgaaatttgaaagtaataaagaaaaattgcgaggaaaacgtacctccatattgagag |
51976208 |
T |
|
| Q |
407 |
caacacgaacaccttgaatttctttacggaatttgagaaataactcagaaggcatcaaattgatgttgtataactcatcccaagaagttgcaggttcctc |
506 |
Q |
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| T |
51976207 |
caacacgaacaccttgaatttctttacggaatttgagaaataactcagaaggcatcaaattgatgttgtataactcatcccacgaagttgcaggttcctc |
51976108 |
T |
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| Q |
507 |
tt |
508 |
Q |
| |
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|| |
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| T |
51976107 |
tt |
51976106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 51972156 - 51972072
Alignment:
| Q |
37 |
aagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagtagtgaa |
121 |
Q |
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| T |
51972156 |
aagaaagtggaggatccatggaaggaaacatgaaacaatgttatgtttgatttgggaaacttggtaatgtttaaatagtagtgaa |
51972072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 17726944 - 17727032
Alignment:
| Q |
33 |
gtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagtagtgaa |
121 |
Q |
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| T |
17726944 |
gtgaaagaaagtggaggatccatggaaggaaaaatgaaacaatgctatgttcaatttggaaaacttgataacgtttaaatagtaatgaa |
17727032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 17712060 - 17712143
Alignment:
| Q |
33 |
gtgaaagaaagtggagaatccgttgaaggaaacatgaaacaatgctatgttcaattcgggaaagttggtaatgtataaatagta |
116 |
Q |
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| T |
17712060 |
gtgaaagaaagtggaggatccatggaaggaaatatgaaataatgttatgttcaatttgagaaactgtgtaatgtttaaatagta |
17712143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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