View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13441_high_11 (Length: 529)
Name: NF13441_high_11
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13441_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Original strand, 49215765 - 49216192
Alignment:
| Q |
17 |
aatgttgattacattgacatgggcaaacaccataaacgttagaaatagaattgtgcttacgtcttcgactgtgcagtacctgtctattatttagtacagc |
116 |
Q |
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| T |
49215765 |
aatgttgattacattgacatgggcaaacaccataaacgttagaaatagaattgtgcttacgtcttcgactgtgcagtacctgtctattatttagtacagc |
49215864 |
T |
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| Q |
117 |
ttaagtttaattactacggtccaatttaaatacaactagtgtttaaatactaagatcctgctctcgagcggctactaatcagtaaactacgagttgcaca |
216 |
Q |
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| T |
49215865 |
ttatgtttaattagtacggtccaatttaaatacaactagtgtttaaatactaagatcctgctctcgagcggctactaatcagtaaactacgagttgcaca |
49215964 |
T |
|
| Q |
217 |
caacaataaacaataaattctgaaaaattcatatgaagataacaaaaacaaatcaaggcattggcataccttatcaagtttgtgaaaagaatcggccctt |
316 |
Q |
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| T |
49215965 |
caacaataagcaataaattctgaaaaattcatatgaagataacaaaaacaaatcaaggcattggcataccttatcaagtttgtgaaaagaatcggccctt |
49216064 |
T |
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| Q |
317 |
cgaggcgtcaatccatgtatggcttctccagcaaccttggaaagccaagatggccacccagcagccacttgttcaccatgtatatggttaggtggattgc |
416 |
Q |
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| T |
49216065 |
cgaggcgtcaatccatgtatggcttctccagcaaccttggaaagccaagatggccacccagcagccacttgttcaccatgtatatggttaggtggattgc |
49216164 |
T |
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| Q |
417 |
tcaattttggattagccttcaaagattg |
444 |
Q |
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| T |
49216165 |
tcaattttggattagccttcaaagattg |
49216192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 442
Target Start/End: Complemental strand, 6700236 - 6700119
Alignment:
| Q |
325 |
caatccatgtatggcttctccagcaaccttggaaagccaagatggccacccagcagccacttgttcaccatgtatatggttaggtggattgctcaatttt |
424 |
Q |
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|||||||| || ||||| ||||||||||| ||||||||||| ||||| ||||| || || ||||||||||| | || ||||||||||| ||||| | |
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| T |
6700236 |
caatccattaatagcttcaccagcaaccttagaaagccaagaaggccaaccagctgcaacctgttcaccatgaacattattaggtggattactcaacctc |
6700137 |
T |
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| Q |
425 |
ggattagccttcaaagat |
442 |
Q |
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| T |
6700136 |
ggattcgccttcgaagat |
6700119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 414
Target Start/End: Original strand, 47180792 - 47180847
Alignment:
| Q |
359 |
agccaagatggccacccagcagccacttgttcaccatgtatatggttaggtggatt |
414 |
Q |
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| T |
47180792 |
agccaagatggccatccagcagcaacctgttcaccacgtaaatgcttaggtggatt |
47180847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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