View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13441_high_18 (Length: 336)
Name: NF13441_high_18
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13441_high_18 |
 | |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 35927678 - 35927984
Alignment:
| Q |
13 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35927678 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataataataaagttagatttatgagattgtgagttacatttcatacttggtctt |
35927777 |
T |
|
| Q |
113 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35927778 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
35927877 |
T |
|
| Q |
213 |
aatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagacgtaagaatccttggc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35927878 |
aatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagacgtaagaatccttggc |
35927977 |
T |
|
| Q |
313 |
agttgat |
319 |
Q |
| |
|
||||||| |
|
|
| T |
35927978 |
agttgat |
35927984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 35910278 - 35910583
Alignment:
| Q |
13 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35910278 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
35910377 |
T |
|
| Q |
113 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
212 |
Q |
| |
|
|||||||| ||| | ||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
35910378 |
ttgaagttggaaaatcatacagaaatgcctttgaggttaacaatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacat |
35910477 |
T |
|
| Q |
213 |
aatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagacgtaagaatccttggc |
312 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||||| || | || ||||| |
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|
| T |
35910478 |
aatgaccagcataactctctccagttatgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctttggc |
35910577 |
T |
|
| Q |
313 |
agttga |
318 |
Q |
| |
|
|||||| |
|
|
| T |
35910578 |
agttga |
35910583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 35921085 - 35921369
Alignment:
| Q |
13 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||| ||||||||||| |||||| ||||||| || ||| | |
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|
| T |
35921085 |
catcatcaatccaagcattccctatctgaaatttttttaagtatagataataatgagattagaattatgagattgcgagttatatttcattattagtcat |
35921184 |
T |
|
| Q |
113 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
212 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
35921185 |
tcgaagtttgaacaacatacagaaatgcctttgaggttaataatggtgttgttatagagtttattgttgtaaagaatagtggatgcaagttgaggaacat |
35921284 |
T |
|
| Q |
213 |
aatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagac |
297 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35921285 |
aatgaccggcataactctctccagttatgtaaaaatctctggttttgtactgtggaaatctctccagccagttgattaggaagac |
35921369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 35940058 - 35940360
Alignment:
| Q |
13 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | | ||| |||||| ||||||||||| ||||||||||||| ||| ||| ||| || ||||| |
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|
| T |
35940058 |
catcatcaatccaagcattccctaactgaaattttgt-atgtacagataa---tgaagttagatatatgagattgtgatttatattgcattattagtctt |
35940153 |
T |
|
| Q |
113 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
212 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
35940154 |
ttgaagtttgatcaacatacagaaatgcctttgaggttaataatggtgttcttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacat |
35940253 |
T |
|
| Q |
213 |
aatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagacgtaagaatccttggc |
312 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
35940254 |
aatgaccagcataactctctccacttatgtaaaaatctcttgttttgtactgtggaaatctctccagccagttgataaggaagacataggaatccttggc |
35940353 |
T |
|
| Q |
313 |
agttgat |
319 |
Q |
| |
|
||||||| |
|
|
| T |
35940354 |
agttgat |
35940360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 35914713 - 35914994
Alignment:
| Q |
13 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| ||| ||||| ||| ||| || ||||| |
|
|
| T |
35914713 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagataatgataaagttagatttatgaggttgacagttatattgcattattagtctt |
35914812 |
T |
|
| Q |
113 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
212 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
35914813 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtcgatgcaagctgcggaacat |
35914912 |
T |
|
| Q |
213 |
aatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaa |
294 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
35914913 |
agtgaccagcataactctctccagttatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgatgaggaa |
35914994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 35934492 - 35934772
Alignment:
| Q |
13 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| || ||| | ||||| ||||||||| | |||| ||| |||||||| ||| ||| || ||||| |
|
|
| T |
35934492 |
catcatcaatccaagcattccctatctgaaaaatttgaa-gtacaaataatcatgaagttagttatatgtgatagtgagttatattgcattattagtctt |
35934590 |
T |
|
| Q |
113 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
212 |
Q |
| |
|
|||||| |||| |||||||||| ||||||||||||||||| | || |||||||||||||||| || |||||||||||| ||||||||||||||||||| |
|
|
| T |
35934591 |
ttgaagattgatcaacatacagatatgcctttgaggttaatgatggttttgttatagagtttatggtggtgaagaatagtggatgcaagttgaggaacat |
35934690 |
T |
|
| Q |
213 |
aatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaa |
294 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35934691 |
aatgaccagcataactctctccagttatgtaaaaatctctggttttgtactgtggaaatctctccagccagttgattaggaa |
35934772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 11084471 - 11084527
Alignment:
| Q |
196 |
tgcaagttgaggaacataatgaccagcataactctctccagctatgtaaaaagctct |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||| |
|
|
| T |
11084471 |
tgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctct |
11084527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 6208831 - 6208910
Alignment:
| Q |
203 |
tgaggaacataatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagcca |
282 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||| | ||| ||| || || ||||||||||||||||| ||||| |
|
|
| T |
6208831 |
tgaggaacataatggccagcataactttcaccagctatgaagaaatctcgagtcttatactgtggaaatctctcaagcca |
6208910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 6215695 - 6215780
Alignment:
| Q |
200 |
agttgaggaacataatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagtt |
285 |
Q |
| |
|
|||||||| |||||||| ||||||||||| || |||| |||| | ||| ||| | || ||||||||||||||||| |||||||| |
|
|
| T |
6215695 |
agttgagggacataatggccagcataactttcaccagttatgaagaaatctcgaatcttatactgtggaaatctctcaagccagtt |
6215780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 316145 - 316183
Alignment:
| Q |
198 |
caagttgaggaacataatgaccagcataactctctccag |
236 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
316145 |
caagttgaggaacataatgtccagcataactttctccag |
316183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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