View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13441_high_28 (Length: 226)
Name: NF13441_high_28
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13441_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 47234274 - 47234162
Alignment:
| Q |
98 |
tcatgaagactttgtgattctggattattgtactcaggatattacatttggtatcagagcgcgatcaatagcatggctcatctaacaattaaattcttag |
197 |
Q |
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| T |
47234274 |
tcatgaagacttcgtgattctgaattattgtactcaggatattacatttggtatcaaagcgcgatcaatagcatggttcatctaacaattaaattcttag |
47234175 |
T |
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| Q |
198 |
actgtgtattttt |
210 |
Q |
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| T |
47234174 |
actgtgtattttt |
47234162 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 13343990 - 13343945
Alignment:
| Q |
54 |
tccatgtttttcaataaggatcagatcaaacggctaaaggatattc |
99 |
Q |
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| T |
13343990 |
tccatgttttccaataaggatcagatcaaacggctaaaggatattc |
13343945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 5790421 - 5790381
Alignment:
| Q |
76 |
agatcaaacggctaaaggatattcatgaagactttgtgatt |
116 |
Q |
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| T |
5790421 |
agatcaaacggctaaaggctattcgtgaagacttcgtgatt |
5790381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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