View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13441_high_5 (Length: 663)
Name: NF13441_high_5
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13441_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 80 - 647
Target Start/End: Complemental strand, 54088258 - 54087694
Alignment:
| Q |
80 |
aggtcctttcttgctgctctactttcacatgcaataacattcattgcaacaagcaaagaaacaacagctaaaatcttcattgaagccattgtcacggatc |
179 |
Q |
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| T |
54088258 |
aggtcctttcttgctgctctactttcacatgcaataacattcattgcaacaagcaaagaaacaacagctaaaatcttcattgaagccattgtcacggatc |
54088159 |
T |
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| Q |
180 |
aaacaataaaaggcaaatatatatatcagcacgtttgaacttatctaaagccaatattgatttagagattgaaatgttttaattgtagagaagtatgttg |
279 |
Q |
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| T |
54088158 |
aaacaataaaaggcaaatatatatatcagcacgtttgaacttatctaaagccaatattgatttagagattgaaatgttttaattgtagagaagtatgttg |
54088059 |
T |
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| Q |
280 |
agatatgcatgctatttatagatgagattatgatagctagcgctaatgtacgtcggcaagcatgtgtaaaagctggaggtgtgcatgcgtatggaaatgg |
379 |
Q |
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| T |
54088058 |
agatatgcatgctatttatagatgagattatga----tagcgctaatgtacgtcggcaagcatgtgtaaaagctagaggtgtgcatgcgtatggaaatgg |
54087963 |
T |
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| Q |
380 |
gacaatgtagggagtgggggtgtcacttatgacataagtcaac-tttttctggtggaaatttttatagcagaaattaatttggatatgtgtacattattt |
478 |
Q |
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| T |
54087962 |
gacaatgtaggaagtgggggtgtcacttgtggcacaagtcaacttttttctggtggaaatttttatagcagaaattaatttggatatgtgtacattattt |
54087863 |
T |
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| Q |
479 |
gtcgttattgagatgagtccattagtaacagtacatgccactcacttcagcataatgtataatacatagtgggatatacatcattttgatacgtgtaatc |
578 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
54087862 |
gtcgttattgagatgagtccattagtaacagtacatgccactcacttcagcataatgtataatacatagtgggatatacatgattttgatacgtgtaatc |
54087763 |
T |
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| Q |
579 |
caaattcaagaagaaatgctattaaggatatgtatgtttatttgcagggccactaaaacacgttaattc |
647 |
Q |
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| T |
54087762 |
caaattcaagaagaaatgctattaaggatatgtatgtttatttgcagggccactaaaacacgttaattc |
54087694 |
T |
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