View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13441_high_7 (Length: 639)
Name: NF13441_high_7
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13441_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 11 - 530
Target Start/End: Complemental strand, 53037860 - 53037341
Alignment:
| Q |
11 |
catcatcataactaggaagaagcaaagaatctccatctgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataaat |
110 |
Q |
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| T |
53037860 |
catcatcataactaggaagaagcaaagaatctccatctgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataaat |
53037761 |
T |
|
| Q |
111 |
tggcaatgtcaaccaactaaccactcctaaatttggatttccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaacttagtc |
210 |
Q |
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| T |
53037760 |
tggcaatgtcaaccaactaaccactcctaaatttggattcccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaacttagtc |
53037661 |
T |
|
| Q |
211 |
aaatcctcttgcttcttaaaatactcaattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttgaagcataccctaaag |
310 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53037660 |
aaatcctcttgcttcttaaaatactcgattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttgaagcataccctaaag |
53037561 |
T |
|
| Q |
311 |
gcttagatattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctccacacgattcctcca |
410 |
Q |
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| T |
53037560 |
gcttagatattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctccacacgattcctcca |
53037461 |
T |
|
| Q |
411 |
atcaacacaaacaccaagcgaagtttgttggtcatttgcatgccctctagctttacttgcacttctccaaacatgaccggttaaggtttcatatctcgta |
510 |
Q |
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| T |
53037460 |
atcaacacaaacaccaagcgaagtttgttggtcatttgcatgccctctagctttacttgcacttctccaaacatgaccggttaaggtttcatatctcgta |
53037361 |
T |
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| Q |
511 |
taacctcgaccattgctagg |
530 |
Q |
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|||||||||||||||||||| |
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| T |
53037360 |
taacctcgaccattgctagg |
53037341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 21 - 530
Target Start/End: Original strand, 39995742 - 39996251
Alignment:
| Q |
21 |
actaggaagaagcaaagaatctccatc---tgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataaattggcaat |
117 |
Q |
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||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||| || || ||||| ||||||||||||||||||||||||||| |
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| T |
39995742 |
actaggaagaagcaatgaatctccatcaagttcttcatgtgttcctagccccatataaacctcctttccccacccaaaatcaagtccataaattggcaat |
39995841 |
T |
|
| Q |
118 |
gtcaaccaactaaccactcctaaatttggatttccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaacttagtcaaatcct |
217 |
Q |
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| |||||||||| |||||||||||| ||||| | |||||| ||||| || ||| || |||| | | | ||||||||||| |||||||||||||| | |
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| T |
39995842 |
gacaaccaactagtcactcctaaattaggattccaataaaaaggccccttctcaccattccctac---aacttgaagatcttggaacttagtcaaatctt |
39995938 |
T |
|
| Q |
218 |
cttgcttcttaaaatactcaattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttgaagcataccctaaaggcttaga |
317 |
Q |
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||||||||||||| |||||| | |||| || | ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |
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| T |
39995939 |
cttgcttcttaaagtactcattccccaacctaatatactcatcgttcactttctcaaccgcttcccttatcctacttgaagcataccctaagggtttaga |
39996038 |
T |
|
| Q |
318 |
tattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctccacacgattcctccaatcaaca |
417 |
Q |
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|||||||| ||||| ||||||||||||| |||||| ||| | ||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |
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| T |
39996039 |
cattaaatcacctgctagactagtagccaaaacatctaaaatggcattcccaaaataccctttaggtaaattaggttccacacgacgcctccaatcaaca |
39996138 |
T |
|
| Q |
418 |
caaacaccaagcgaagtttgttggtcatttgcatgccctctagctttacttgcacttctccaaacatgaccggttaaggtttcatatctcgtataacctc |
517 |
Q |
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||||||||||||| ||| ||||||||||| |||| |||| ||||||| |||||||||||||| ||||||||||| |||||||| |||| |||||||| |
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| T |
39996139 |
caaacaccaagcgcggttggttggtcatttttatgctctcttgctttacatgcacttctccaaatatgaccggttactgtttcatacctcgaataacctc |
39996238 |
T |
|
| Q |
518 |
gaccattgctagg |
530 |
Q |
| |
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||||||| ||||| |
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| T |
39996239 |
gaccattactagg |
39996251 |
T |
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Back To:
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