View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13441_high_8 (Length: 557)

Name: NF13441_high_8
Description: NF13441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13441_high_8
NF13441_high_8
[»] chr2 (2 HSPs)
chr2 (1-439)||(997842-998287)
chr2 (323-399)||(24454577-24454653)
[»] chr5 (2 HSPs)
chr5 (494-538)||(14529097-14529141)
chr5 (328-398)||(30463038-30463108)
[»] chr8 (2 HSPs)
chr8 (323-398)||(8158524-8158599)
chr8 (323-399)||(5662628-5662704)
[»] chr3 (2 HSPs)
chr3 (337-399)||(47763911-47763973)
chr3 (328-398)||(32015678-32015748)
[»] chr1 (2 HSPs)
chr1 (384-438)||(1721579-1721633)
chr1 (328-398)||(25223283-25223353)


Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 998287 - 997842
Alignment:
Q  1 ggttggggaatgagttcttgaa--atgttattgattttttggaagaagaaatggtagcattggaatgcacgtggtaaatgtggtggttaatacgttggaa 98  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  998287 ggttggggaatgagttcttgaaggatgttattgattttttggaagaagaaatgttagcattggaatgcacgtagtaaatgtggtggttaatacgttggaa 998188  T
Q  99 atatatgtgcacttcactatcttgagaaggtgtttgcaccatttaaaatagaagcattga--aagtatgggttatcggttaatgcatcttacaatatcca 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  998187 atatatgtgcacttcactatcttgagaaggtgtttgcaccatttaaaatggaagcattgagaaagtatgggttatcagttaatgcatcttacaatatcca 998088  T
Q  197 agacttatacgtaaggggaataagaactatgcattgaaaatcaagaatgcacaataaatagtttagttaattgagaagaagattttggaaaatgat---a 293  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   |    
T  998087 agacttatacgtatgaggaataagaactatgcattgaaaatcaagaatgcacaataaatagtttagttaattgagaagaagattttgggaaatgatcata 997988  T
Q  294 tcagttaaatcatccaagggccagatataagattagatgaaaggatgagatgaatgcctagccagatgatttgatcaaacggccatgcttaattggcgcc 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||    
T  997987 tcagttaaatcatccaagggccagatataagattagatgaaaggatgagatgaatgcttagtcagatgatttgatcaaacggccatccttaattggcgcc 997888  T
Q  394 taaaaacagcagaattagggttggcagggctaattggagtgttaac 439  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  997887 taaaaacagcagaattagggttggcagggctaattgaagtgttaac 997842  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 24454653 - 24454577
Alignment:
Q  323 agattagatgaaaggatgagatgaatgcctagccagatgatttgatcaaacggccatgcttaattggcgcctaaaaa 399  Q
    ||||||||| ||||||||||||||||| | ||||| |||||  |||| ||||||| | |||  ||||||||||||||    
T  24454653 agattagatcaaaggatgagatgaatgtcaagccaaatgatgagatccaacggccctccttgtttggcgcctaaaaa 24454577  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 494 - 538
Target Start/End: Original strand, 14529097 - 14529141
Alignment:
Q  494 accgcctattttaactgcgttaaccacttagatagtagtcgcaaa 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14529097 accgcctattttaactgcgttaaccacttagatagtagtcgcaaa 14529141  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 398
Target Start/End: Original strand, 30463038 - 30463108
Alignment:
Q  328 agatgaaaggatgagatgaatgcctagccagatgatttgatcaaacggccatgcttaattggcgcctaaaa 398  Q
    |||| |||||||||||||||||| |||| || | |||||||||||||||  | ||||||||||||| ||||    
T  30463038 agatcaaaggatgagatgaatgcttagctagctcatttgatcaaacggctctccttaattggcgcccaaaa 30463108  T

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Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 323 - 398
Target Start/End: Complemental strand, 8158599 - 8158524
Alignment:
Q  323 agattagatgaaaggatgagatgaatgcctagccagatgatttgatcaaacggccatgcttaattggcgcctaaaa 398  Q
    ||||||||| |||||||||||||||||  |||| || | |||||||||||||||| ||||||||||||||| ||||    
T  8158599 agattagatcaaaggatgagatgaatgattagctagctcatttgatcaaacggccctgcttaattggcgcccaaaa 8158524  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 5662704 - 5662628
Alignment:
Q  323 agattagatgaaaggatgagatgaatgcctagccagatgatttgatcaaacggccatgcttaattggcgcctaaaaa 399  Q
    |||||| || ||||||||||||||||||||||||| |||||  |||| ||||| | | ||| |||||||||||||||    
T  5662704 agattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaa 5662628  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 47763911 - 47763973
Alignment:
Q  337 gatgagatgaatgcctagccagatgatttgatcaaacggccatgcttaattggcgcctaaaaa 399  Q
    ||||||||||||||||||||||||||||||||| ||||| | | ||| |||||||||||||||    
T  47763911 gatgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaa 47763973  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 398
Target Start/End: Original strand, 32015678 - 32015748
Alignment:
Q  328 agatgaaaggatgagatgaatgcctagccagatgatttgatcaaacggccatgcttaattggcgcctaaaa 398  Q
    |||| |||||||||||||||||  |||| || | |||||||||||||||  | ||||||||||||| ||||    
T  32015678 agatcaaaggatgagatgaatgtttagctagctcatttgatcaaacggctctccttaattggcgcccaaaa 32015748  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 438
Target Start/End: Complemental strand, 1721633 - 1721579
Alignment:
Q  384 aattggcgcctaaaaacagcagaattagggttggcagggctaattggagtgttaa 438  Q
    ||||||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  1721633 aattggcgcctaaaaacagtagaattagggttggcagcgttaattggagtgttaa 1721579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 398
Target Start/End: Complemental strand, 25223353 - 25223283
Alignment:
Q  328 agatgaaaggatgagatgaatgcctagccagatgatttgatcaaacggccatgcttaattggcgcctaaaa 398  Q
    |||| |||||||||||||||||| |||| || | |||||||||||||||  | ||||||||||||| ||||    
T  25223353 agatcaaaggatgagatgaatgcttagctagctcatttgatcaaacggctctccttaattggcgcccaaaa 25223283  T

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